Tara A. Gianoulis, Ph.D.

Yale University, New Haven, CT 
Computational Biology and Bioinformatics
"Tara Gianoulis"


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Mark B. Gerstein grad student 2009 Yale
 (Mining biological complexity: Cross integration of large-scale metagenomics, environmental, and chemical datasets.)
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Gianoulis TA, Griffin MA, Spakowicz DJ, et al. (2012) Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides. Plos Genetics. 8: e1002558
Zheng W, Gianoulis TA, Karczewski KJ, et al. (2011) Regulatory variation within and between species. Annual Review of Genomics and Human Genetics. 12: 327-46
Gianoulis TA, Agarwal A, Snyder M, et al. (2011) The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics. Genome Biology. 12: R32
Euskirchen GM, Auerbach RK, Davidov E, et al. (2011) Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches. Plos Genetics. 7: e1002008
Habegger L, Sboner A, Gianoulis TA, et al. (2011) RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinformatics (Oxford, England). 27: 281-3
Li X, Gianoulis TA, Yip KY, et al. (2010) Extensive in vivo metabolite-protein interactions revealed by large-scale systematic analyses. Cell. 143: 639-50
Patel PV, Gianoulis TA, Bjornson RD, et al. (2010) Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families. Genome Research. 20: 960-71
Gianoulis TA, Raes J, Patel PV, et al. (2009) Quantifying environmental adaptation of metabolic pathways in metagenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 1374-9
Borneman AR, Gianoulis TA, Zhang ZD, et al. (2007) Divergence of transcription factor binding sites across related yeast species. Science (New York, N.Y.). 317: 815-9
Lu LJ, Sboner A, Huang YJ, et al. (2007) Comparing classical pathways and modern networks: towards the development of an edge ontology. Trends in Biochemical Sciences. 32: 320-31
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