Dylan C. Chivian, Ph.D.
Affiliations: | University of Washington, Seattle, Seattle, WA |
Area:
protein structure predictionGoogle:
"Dylan Chivian"Parents
Sign in to add mentor| David Baker | grad student | 2005 | University of Washington | |
| (Application of information from homologous proteins for the prediction of protein structure.) | ||||
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Publications
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| Chivian D, Dehal PS, Keller K, et al. (2013) MetaMicrobesOnline: phylogenomic analysis of microbial communities. Nucleic Acids Research. 41: D648-54 |
| Dehal PS, Joachimiak MP, Price MN, et al. (2010) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Research. 38: D396-400 |
| Chivian D, Brodie EL, Alm EJ, et al. (2008) Environmental genomics reveals a single-species ecosystem deep within Earth. Science (New York, N.Y.). 322: 275-8 |
| Das R, Qian B, Raman S, et al. (2007) Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. Proteins. 69: 118-28 |
| Tress M, Cheng J, Baldi P, et al. (2007) Assessment of predictions submitted for the CASP7 domain prediction category. Proteins. 69: 137-51 |
| Haft RJ, Gachelet EG, Nguyen T, et al. (2007) In vivo oligomerization of the F conjugative coupling protein TraD. Journal of Bacteriology. 189: 6626-34 |
| Malmström L, Riffle M, Strauss CEM, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology Plos Biology. 5 |
| Chivian D, Baker D. (2006) Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection Nucleic Acids Research. 34 |
| Misura KM, Chivian D, Rohl CA, et al. (2006) Physically realistic homology models built with ROSETTA can be more accurate than their templates. Proceedings of the National Academy of Sciences of the United States of America. 103: 5361-6 |
| Kim DE, Chivian D, Malmström L, et al. (2005) Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM. Proteins. 61: 193-200 |