Liliana D. Florea, Ph.D.

Affiliations: 
2000 Pennsylvania State University, State College, PA, United States 
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"Liliana Florea"

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Webb Miller grad student 2000 Penn State
 (Detecting functional regions in DNA with sequence comparison methods: Program development and evaluation.)
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Publications

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He Z, Chen O, Phillips N, et al. (2024) Predicting exonization in the human genome with a deep learning model. Biorxiv : the Preprint Server For Biology
Song L, Sabunciyan S, Yang G, et al. (2019) A multi-sample approach increases the accuracy of transcript assembly. Nature Communications. 10: 5000
Afsari B, Guo T, Considine M, et al. (2018) Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer. Bioinformatics (Oxford, England)
Afsari B, Guo T, Considine M, et al. (2017) Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer Cancer Research. 77: 3577-3577
Song L, Shankar DS, Florea L. (2016) Rascaf: Improving Genome Assembly with RNA Sequencing Data. The Plant Genome. 9
Song L, Sabunciyan S, Florea L. (2016) CLASS2: accurate and efficient splice variant annotation from RNA-seq reads. Nucleic Acids Research
Song L, Florea L. (2015) Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads. Gigascience. 4: 48
Florea L, Song L, Salzberg SL. (2013) Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues. F1000research. 2: 188
Florea LD, Salzberg SL. (2013) Genome-guided transcriptome assembly in the age of next-generation sequencing. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1234-40
Song L, Florea L. (2013) CLASS: constrained transcript assembly of RNA-seq reads. Bmc Bioinformatics. 14: 1-8
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