Chih-Hao Hsu, Ph.D.

Affiliations: 
2009 Pennsylvania State University, State College, PA, United States 
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"Chih-Hao Hsu"

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Webb Miller grad student 2009 Penn State
 (Inference of orthologs, while considering gene conversion, to evaluate whole-genome multiple sequence alignments.)
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Publications

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Li C, Tate H, Huang X, et al. (2024) The spread of pESI-mediated extended-spectrum cephalosporin resistance in Salmonella serovars-Infantis, Senftenberg, and Alachua isolated from food animal sources in the United States. Plos One. 19: e0299354
Song G, Riemer C, Dickins B, et al. (2012) Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Biology and Evolution. 4: 586-601
Song G, Hsu CH, Riemer C, et al. (2011) Conversion events in gene clusters. Bmc Evolutionary Biology. 11: 226
Song G, Hsu CH, Riemer C, et al. (2011) Evaluation of methods for detecting conversion events in gene clusters. Bmc Bioinformatics. 12: S45
Hsu CH, Zhang Y, Hardison RC, et al. (2010) An effective method for detecting gene conversion events in whole genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1281-97
Zhang Y, Song G, Hsu CH, et al. (2009) Simultaneous history reconstruction for complex gene clusters in multiple species. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 162-73
Hsu CH, Zhang Y, Hardison R, et al. (2009) Whole-genome analysis of gene conversion events Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 181-192
Gilbert MT, Drautz DI, Lesk AM, et al. (2008) Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proceedings of the National Academy of Sciences of the United States of America. 105: 8327-32
Hou M, Berman P, Hsu CH, et al. (2007) HomologMiner: looking for homologous genomic groups in whole genomes. Bioinformatics (Oxford, England). 23: 917-25
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