Arvind K. Chavali, Ph.D.
Affiliations: | 2011 | University of Virginia, Charlottesville, VA |
Area:
Computational Systems BiologyGoogle:
"Arvind Chavali"Parents
Sign in to add mentor| Jason A. Papin | grad student | 2011 | UVA | |
| (Towards target discovery and drug repurposing in a neglected tropical disease: a metabolic network approach.) | ||||
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Publications
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| Chavali AK, Rhee SY. (2017) Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites. Briefings in Bioinformatics |
| Schlapfer P, Zhang P, Wang C, et al. (2017) Genome-wide prediction of metabolic enzymes, pathways and gene clusters in plants. Plant Physiology |
| Chavali AK, Wong VC, Miller-Jensen K. (2015) Distinct promoter activation mechanisms modulate noise-driven HIV gene expression. Scientific Reports. 5: 17661 |
| Thiele I, Swainston N, Fleming RM, et al. (2013) A community-driven global reconstruction of human metabolism. Nature Biotechnology. 31: 419-25 |
| Blais EM, Chavali AK, Papin JA. (2013) Linking genome-scale metabolic modeling and genome annotation. Methods in Molecular Biology (Clifton, N.J.). 985: 61-83 |
| Chavali AK, Blazier AS, Tlaxca JL, et al. (2012) Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease. Bmc Systems Biology. 6: 27 |
| Chavali AK, D'Auria KM, Hewlett EL, et al. (2012) A metabolic network approach for the identification and prioritization of antimicrobial drug targets. Trends in Microbiology. 20: 113-23 |
| Benedict KF, Mac Gabhann F, Amanfu RK, et al. (2011) Systems analysis of small signaling modules relevant to eight human diseases. Annals of Biomedical Engineering. 39: 621-35 |
| Gianchandani EP, Chavali AK, Papin JA. (2010) The application of flux balance analysis in systems biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 372-82 |
| Manichaikul A, Ghamsari L, Hom EF, et al. (2009) Metabolic network analysis integrated with transcript verification for sequenced genomes. Nature Methods. 6: 589-92 |