Casey Bergman

Affiliations: 
University of Georgia, Athens, Athens, GA, United States 
Area:
evolution, genomics, noncoding DNA
Website:
http://bergmanlab.genetics.uga.edu/
Google:
"Casey Bergman"
Cross-listing: FlyTree - Evolution Tree

Parents

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Charles Aquadro research assistant 1995-1996 Cornell (FlyTree)
Martin Kreitman grad student 1996-2001 Chicago (FlyTree)
 (Evolutionary analyses of transcriptional control sequences in Drosophila.)
Susan Celniker post-doc 2001-2003 LBNL (FlyTree)
Michael Ashburner post-doc 2003-2005 Cambridge (FlyTree)

Collaborators

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Michael Ludwig collaborator 1996-2001 Chicago (FlyTree)
Manolis Dermitzakis collaborator 2000-2003 Penn State (FlyTree)
Daniel Avery Pollard collaborator 2001-2004 LBNL (Evolution Tree)
Dmitri Petrov collaborator 2002-2005 LBNL (FlyTree)
Hadi Quesneville collaborator 2003-2007 Université Pierre et Marie Curie – Paris VI (FlyTree)
David H. Ardell collaborator 2004-2007 Uppsala
Thomas Down collaborator 2004-2007 The Wellcome Trust Sanger Institute
Jose M. Ranz collaborator 2004-2007 Cambridge (FlyTree)
Stein Aerts collaborator 2006-2008 KU Leuven (FlyTree)
Douda Bensasson collaborator 2005-2009 University of Manchester (Evolution Tree)
Andy Clark collaborator 2000-2010 Cornell (FlyTree)
Sam Griffiths-Jones collaborator 2006-2010 University of Manchester
Goran Nenadic collaborator 2006-2011 University of Manchester
BETA: Related publications

Publications

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Dias GB, Altammami MA, El-Shafie HAF, et al. (2021) Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Scientific Reports. 11: 9987
Czaja W, Bensasson D, Ahn HW, et al. (2020) Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. Plos Genetics. 16: e1008632
Hemmer LW, Dias GB, Smith B, et al. (2020) Hybrid dysgenesis in results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered. Mobile Dna. 11: 10
Hamlin JAP, Dias GB, Bergman CM, et al. (2019) Phased Diploid Genome Assemblies for Three Strains of from Oak Trees. G3 (Bethesda, Md.)
Manee MM, Jackson J, Bergman CM. (2018) Conserved noncoding elements influence the transposable element landscape in Drosophila. Genome Biology and Evolution
Bergman CM, Han S, Nelson MG, et al. (2017) Genomic analysis of P elements in natural populations of Drosophila melanogaster. Peerj. 5: e3824
Nelson MG, Linheiro RS, Bergman CM. (2017) McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole Genome Shotgun Sequencing Data. G3 (Bethesda, Md.)
Barsh GS, Bergman CM, Brown CD, et al. (2016) Bringing PLOS Genetics Editors to Preprint Servers. Plos Genetics. 12: e1006448
Miller DE, Cook KR, Yeganeh Kazemi N, et al. (2016) Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America
Rahman R, Chirn GW, Kanodia A, et al. (2015) Unique transposon landscapes are pervasive across Drosophila melanogaster genomes. Nucleic Acids Research
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