Casey Bergman

Affiliations: 
University of Georgia, Athens, Athens, GA, United States 
Area:
evolution, genomics, noncoding DNA
Website:
http://bergmanlab.genetics.uga.edu/
Google:
"Casey Bergman"
Cross-listing: FlyTree - Evolution Tree

Parents

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Charles Aquadro research assistant 1995-1996 Cornell (FlyTree)
Martin Kreitman grad student 1996-2001 Chicago (FlyTree)
 (Evolutionary analyses of transcriptional control sequences in Drosophila.)
Susan Celniker post-doc 2001-2003 LBNL (FlyTree)
Michael Ashburner post-doc 2003-2005 Cambridge (FlyTree)

Collaborators

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Michael Ludwig collaborator 1996-2001 Chicago (FlyTree)
Manolis Dermitzakis collaborator 2000-2003 Penn State (FlyTree)
Daniel Avery Pollard collaborator 2001-2004 LBNL (Evolution Tree)
Dmitri Petrov collaborator 2002-2005 LBNL (FlyTree)
Hadi Quesneville collaborator 2003-2007 Université Pierre et Marie Curie – Paris VI (FlyTree)
David H. Ardell collaborator 2004-2007 Uppsala
Thomas Down collaborator 2004-2007 The Wellcome Trust Sanger Institute
Jose M. Ranz collaborator 2004-2007 Cambridge (FlyTree)
Stein Aerts collaborator 2006-2008 KU Leuven (FlyTree)
Douda Bensasson collaborator 2005-2009 University of Manchester (Evolution Tree)
Andy Clark collaborator 2000-2010 Cornell (FlyTree)
Sam Griffiths-Jones collaborator 2006-2010 University of Manchester
Goran Nenadic collaborator 2006-2011 University of Manchester
BETA: Related publications

Publications

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Chen J, McQueary H, Hall DW, et al. (2022) Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768. Microbiology Resource Announcements. 11: e0086821
Chen J, Garfinkel DJ, Bergman CM. (2022) Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001. Microbiology Resource Announcements. e0097221
Han S, Basting PJ, Dias GB, et al. (2021) Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics. 219
Mariyappa D, Rusch DB, Han S, et al. (2021) A novel transposable element based authentication protocol for Drosophila cell lines. G3 (Bethesda, Md.)
Dias GB, Aldossary AM, El-Shafie HAF, et al. (2021) Complete mitochondrial genome of the longhorn date palm stem borer (Reiche, 1878). Mitochondrial Dna. Part B, Resources. 6: 3214-3216
Dias GB, Altammami MA, El-Shafie HAF, et al. (2021) Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Scientific Reports. 11: 9987
Chung M, Basting PJ, Patkus RS, et al. (2020) A Meta-Analysis of Transcriptomics Reveals a Stage-Specific Transcriptional Response Shared Across Different Hosts. G3 (Bethesda, Md.)
Czaja W, Bensasson D, Ahn HW, et al. (2020) Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. Plos Genetics. 16: e1008632
Hemmer LW, Dias GB, Smith B, et al. (2020) Hybrid dysgenesis in results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered. Mobile Dna. 11: 10
Basting PJ, Bergman CM. (2019) Complete Genome Assemblies for Three Variants of the Endosymbiont of Drosophila melanogaster. Microbiology Resource Announcements. 8
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