Eric D. Scheeff, Ph.D.

2003 University of California, San Diego, La Jolla, CA 
"Eric Scheeff"


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Philip E. Bourne grad student 2003 UCSD
 (Multiple alignments of protein structures and their application to sequence annotation with hidden Markov models.)
Gerard Manning post-doc 2006-2011 Salk Institute
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Manning G, Scheeff E. (2010) How the vertebrates were made: selective pruning of a double-duplicated genome. Bmc Biology. 8: 144
Scheeff ED, Axelrod HL, Miller MD, et al. (2010) Genomics, evolution, and crystal structure of a new family of bacterial spore kinases. Proteins. 78: 1470-82
Nathanson JL, Jappelli R, Scheeff ED, et al. (2009) Short Promoters in Viral Vectors Drive Selective Expression in Mammalian Inhibitory Neurons, but do not Restrict Activity to Specific Inhibitory Cell-Types. Frontiers in Neural Circuits. 3: 19
Scheeff ED, Eswaran J, Bunkoczi G, et al. (2009) Structure of the pseudokinase VRK3 reveals a degraded catalytic site, a highly conserved kinase fold, and a putative regulatory binding site. Structure (London, England : 1993). 17: 128-38
Chung JL, Beaver JE, Scheeff ED, et al. (2007) Con-Struct Map: a comparative contact map analysis tool. Bioinformatics (Oxford, England). 23: 2491-2
Scheeff ED, Bourne PE. (2006) Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. Bmc Bioinformatics. 7: 410
Scheeff ED, Bourne PE. (2005) Structural evolution of the protein kinase-like superfamily. Plos Computational Biology. 1: e49
Guda C, Lu S, Scheeff ED, et al. (2004) CE-MC: a multiple protein structure alignment server. Nucleic Acids Research. 32: W100-3
Scheeff ED, Fink JL. (2003) Fundamentals of protein structure. Methods of Biochemical Analysis. 44: 15-39
Guda C, Scheeff ED, Bourne PE, et al. (2001) A new algorithm for the alignment of multiple protein structures using Monte Carlo optimization. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 275-86
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