Uwe Ohler
Affiliations: | Computational Biology and Bioinformatics | Duke University, Durham, NC |
Area:
Bioinformatics, Computer Science, StatisticsGoogle:
"Uwe Ohler"Children
Sign in to add trainee| Daniel L. Mace | grad student | 2009 | Duke |
| Elizabeth A. Rach | grad student | 2010 | Duke |
| Parawee Lekprasert | grad student | 2012 | Duke |
| Galip G. Yardimci | grad student | 2014 | Duke |
| Neelanjan Mukherjee | post-doc | 2011-2017 | Max Delbrück Center for Molecular Medicine (Cell Biology Tree) |
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Publications
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| Nolan TM, Vukašinović N, Hsu CW, et al. (2023) Brassinosteroid gene regulatory networks at cellular resolution in the root. Science (New York, N.Y.). 379: eadf4721 |
| McGarvey AC, Kopp W, Vučićević D, et al. (2022) Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos. Cell Genomics. 2: 100083 |
| Harnett D, Ambrozkiewicz MC, Zinnall U, et al. (2022) A critical period of translational control during brain development at codon resolution. Nature Structural & Molecular Biology |
| Garipler G, Lu C, Morrissey A, et al. (2022) The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes. Cell Reports. 38: 110524 |
| Harnett D, Meerdink E, Calviello L, et al. (2021) Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant. Methods in Molecular Biology (Clifton, N.J.). 2252: 331-346 |
| Lenzen B, Rühle T, Lehniger MK, et al. (2020) The Chloroplast RNA Binding Protein CP31A Has a Preference for mRNAs Encoding the Subunits of the Chloroplast NAD(P)H Dehydrogenase Complex and Is Required for Their Accumulation. International Journal of Molecular Sciences. 21 |
| Kopp W, Monti R, Tamburrini A, et al. (2020) Deep learning for genomics using Janggu. Nature Communications. 11: 3488 |
| Calviello L, Hirsekorn A, Ohler U. (2020) Quantification of translation uncovers the functions of the alternative transcriptome. Nature Structural & Molecular Biology |
| Ghanbari M, Ohler U. (2020) Deep neural networks for interpreting RNA-binding protein target preferences. Genome Research |
| Galupa R, Nora EP, Worsley-Hunt R, et al. (2019) A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary. Molecular Cell |