David M. MacAlpine
Affiliations: | Computational Biology and Bioinformatics | Duke University, Durham, NC |
Area:
Bioinformatics, Molecular Biology, Computer Science, GeneticsGoogle:
"David MacAlpine"Children
Sign in to add traineeQueying Ding | grad student | 2011 | Duke |
Matthew L. Eaton | grad student | 2011 | Duke |
Leyna C. DeNapoli | grad student | 2013 | Duke |
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Publications
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Chen B, MacAlpine HK, Hartemink AJ, et al. (2023) Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase. Genome Research |
Chen B, MacAlpine HK, Hartemink AJ, et al. (2023) Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase. Biorxiv : the Preprint Server For Biology |
Li Y, Hartemink AJ, MacAlpine DM. (2021) Cell-Cycle-Dependent Chromatin Dynamics at Replication Origins. Genes. 12 |
Hoffman RA, MacAlpine HK, MacAlpine DM. (2021) Disruption of origin chromatin structure by helicase activation in the absence of DNA replication. Genes & Development. 35: 1339-1355 |
MacAlpine DM. (2021) Stochastic initiation of DNA replication across the human genome. Molecular Cell. 81: 2873-2874 |
Mitra S, Zhong J, Tran TQ, et al. (2021) RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data. Nucleic Acids Research |
Tran TQ, MacAlpine HK, Tripuraneni V, et al. (2021) Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Research |
Tripuraneni V, Memisoglu G, MacAlpine HK, et al. (2021) Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair. Genome Research |
Mitra S, Zhong J, MacAlpine DM, et al. (2020) RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy. Research in Computational Molecular Biology : ... Annual International Conference, Recomb ... : Proceedings. Recomb (Conference : 2005-). 12074: 136-151 |
Gutiérrez MP, MacAlpine HK, MacAlpine DM. (2019) Nascent chromatin occupancy profiling reveals locus- and factor-specific chromatin maturation dynamics behind the DNA replication fork. Genome Research |