Galip G. Yardimci, Ph.D.
Affiliations: | 2014 | Computational Biology and Bioinformatics | Duke University, Durham, NC |
Area:
Bioinformatics, Computer Science, StatisticsGoogle:
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Publications
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| Agarwal V, Inoue F, Schubach M, et al. (2023) Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types. Biorxiv : the Preprint Server For Biology |
| Kim HJ, Yardımcı GG, Bonora G, et al. (2020) Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. Plos Computational Biology. 16: e1008173 |
| Bertero A, Fields PA, Ramani V, et al. (2019) Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory. Nature Communications. 10: 1538 |
| Yardımcı GG, Ozadam H, Sauria MEG, et al. (2019) Measuring the reproducibility and quality of Hi-C data. Genome Biology. 20: 57 |
| Dixon JR, Xu J, Dileep V, et al. (2018) Integrative detection and analysis of structural variation in cancer genomes. Nature Genetics |
| Lin D, Bonora G, Yardımcı GG, et al. (2018) Computational methods for analyzing and modeling genome structure and organization. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. e1435 |
| Ursu O, Boley N, Taranova M, et al. (2018) GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs. Bioinformatics (Oxford, England) |
| Yang T, Zhang F, Yardimci GG, et al. (2017) HiCRep: assessing the reproducibility of Hi-C data using a stratum- adjusted correlation coefficient. Genome Research |
| Yardımcı GG, Noble WS. (2017) Software tools for visualizing Hi-C data. Genome Biology. 18: 26 |
| Yardımcı GG, Noble WS. (2015) Predictive model of 3D domain formation via CTCF-mediated extrusion. Proceedings of the National Academy of Sciences of the United States of America. 112: 14404-5 |