Emily S. Charlson, Ph.D.
Affiliations: | 2012 | Cell and Molecular Biology | University of Pennsylvania, Philadelphia, PA, United States |
Area:
Bioinformatics, Molecular Biology, ImmunologyGoogle:
"Emily Charlson"Parents
Sign in to add mentor| Frederic D. Bushman | grad student | 2012 | Penn | |
| (The human respiratory tract microbiome in health and disease.) | ||||
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Publications
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| Beck JM, Schloss PD, Venkataraman A, et al. (2015) Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals. American Journal of Respiratory and Critical Care Medicine. 192: 1335-44 |
| Bittinger K, Charlson ES, Loy E, et al. (2014) Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing. Genome Biology. 15: 487 |
| Huang YJ, Charlson ES, Collman RG, et al. (2013) The role of the lung microbiome in health and disease. A National Heart, Lung, and Blood Institute workshop report. American Journal of Respiratory and Critical Care Medicine. 187: 1382-7 |
| Lozupone C, Cota-Gomez A, Palmer BE, et al. (2013) Widespread colonization of the lung by Tropheryma whipplei in HIV infection. American Journal of Respiratory and Critical Care Medicine. 187: 1110-7 |
| Charlson ES, Bittinger K, Chen J, et al. (2012) Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. Plos One. 7: e42786 |
| Charlson ES, Diamond JM, Bittinger K, et al. (2012) Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. American Journal of Respiratory and Critical Care Medicine. 186: 536-45 |
| Chen J, Bittinger K, Charlson ES, et al. (2012) Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics (Oxford, England). 28: 2106-13 |
| Knights D, Kuczynski J, Charlson ES, et al. (2011) Bayesian community-wide culture-independent microbial source tracking Nature Methods. 8: 761-765 |
| Charlson ES, Bittinger K, Haas AR, et al. (2011) Topographical continuity of bacterial populations in the healthy human respiratory tract. American Journal of Respiratory and Critical Care Medicine. 184: 957-63 |
| Yilmaz P, Kottmann R, Field D, et al. (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20 |