Yuhui Cheng, Ph.D.

2007 Chemistry University of California, San Diego, La Jolla, CA 
Physical Chemistry
"Yuhui Cheng"


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J. Andrew McCammon grad student 2007 UCSD
 (Multiscale simulations of biochemically reacting systems.)
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Cheng Y, Lindert S, Oxenford L, et al. (2016) The Effects of Cardiac Troponin I Mutation P83S on Contractile Properties and the Modulation by PKA-Mediated Phosphorylation. The Journal of Physical Chemistry. B
Cheng Y, Rao V, Tu AY, et al. (2015) Troponin I Mutations R146G and R21C Alter Cardiac Troponin Function, Contractile Properties, and Modulation by Protein Kinase A (PKA)-mediated Phosphorylation. The Journal of Biological Chemistry. 290: 27749-66
Lindert S, Cheng Y, Kekenes-Huskey P, et al. (2015) Effects of HCM cTnI mutation R145G on troponin structure and modulation by PKA phosphorylation elucidated by molecular dynamics simulations. Biophysical Journal. 108: 395-407
Cheng Y, Lindert S, Kekenes-Huskey P, et al. (2014) Computational studies of the effect of the S23D/S24D troponin I mutation on cardiac troponin structural dynamics. Biophysical Journal. 107: 1675-85
Rao V, Cheng Y, Lindert S, et al. (2014) PKA phosphorylation of cardiac troponin I modulates activation and relaxation kinetics of ventricular myofibrils. Biophysical Journal. 107: 1196-204
Liao T, Zhang Y, Kekenes-Huskey PM, et al. (2013) Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes. Molecular Based Mathematical Biology (Online). 1
Kekenes-Huskey PM, Cheng Y, Hake JE, et al. (2012) Modeling effects of L-type ca(2+) current and na(+)-ca(2+) exchanger on ca(2+) trigger flux in rabbit myocytes with realistic T-tubule geometries. Frontiers in Physiology. 3: 351
Kang M, Roberts C, Cheng Y, et al. (2011) Gating and Intermolecular Interactions in Ligand-Protein Association: Coarse-Grained Modeling of HIV-1 Protease. Journal of Chemical Theory and Computation. 7: 3438-46
Cheng Y, Yu Z, Hoshijima M, et al. (2010) Numerical analysis of Ca2+ signaling in rat ventricular myocytes with realistic transverse-axial tubular geometry and inhibited sarcoplasmic reticulum. Plos Computational Biology. 6: e1000972
Perryman AL, Forli S, Morris GM, et al. (2010) A dynamic model of HIV integrase inhibition and drug resistance. Journal of Molecular Biology. 397: 600-15
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