Kalliopi Trachana

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=4822
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"Kalliopi Trachana"
Cross-listing: Chemistry Tree

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Publications

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Bargaje R, Trachana K, Shelton MN, et al. (2017) Cell population structure prior to bifurcation predicts efficiency of directed differentiation in human induced pluripotent cells. Proceedings of the National Academy of Sciences of the United States of America
Mojtahedi M, Skupin A, Zhou J, et al. (2016) Cell Fate Decision as High-Dimensional Critical State Transition. Plos Biology. 14: e2000640
Trachana K, Forslund K, Larsson T, et al. (2014) A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation. Plos One. 9: e111122
Powell S, Forslund K, Szklarczyk D, et al. (2014) eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Research. 42: D231-9
Chen WH, Trachana K, Lercher MJ, et al. (2012) Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age. Molecular Biology and Evolution. 29: 1703-6
Powell S, Szklarczyk D, Trachana K, et al. (2012) eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Research. 40: D284-9
Trachana K, Larsson TA, Powell S, et al. (2011) Orthology prediction methods: a quality assessment using curated protein families. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 33: 769-80
Trachana K, Jensen LJ, Bork P. (2010) Evolution and regulation of cellular periodic processes: a role for paralogues. Embo Reports. 11: 233-8
Christodoulou F, Raible F, Tomer R, et al. (2010) Ancient animal microRNAs and the evolution of tissue identity. Nature. 463: 1084-8
Papanikolaou N, Trachana K, Theodosiou T, et al. (2009) Gene socialization: gene order, GC content and gene silencing in Salmonella. Bmc Genomics. 10: 597
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