Takuji Yamada

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=4641
Google:
"Takuji Yamada"
Cross-listing: Chemistry Tree

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Hikaru Watanabe grad student 2014-2019 Tokyo Institute of Technology (Chemistry Tree)
Pande Putu Erawijantari grad student 2015-2020 Tokyo Institute of Technology (Chemistry Tree)
Yuya Nakamura grad student 2017-2020 Tokyo Institute of Technology (Chemistry Tree)
Shinya Suzuki grad student 2017-2020 Tokyo Institute of Technology (Chemistry Tree)
Naoki Watarai grad student 2017-2020 Tokyo Institute of Technology (Chemistry Tree)
Sayaka Mizutani post-doc 2015- Tokyo Institute of Technology (Chemistry Tree)
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Publications

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Nagai M, Moriyama M, Ishii C, et al. (2023) High body temperature increases gut microbiota-dependent host resistance to influenza A virus and SARS-CoV-2 infection. Nature Communications. 14: 3863
Rynazal R, Fujisawa K, Shiroma H, et al. (2023) Leveraging explainable AI for gut microbiome-based colorectal cancer classification. Genome Biology. 24: 21
Narii N, Zha L, Sobue T, et al. (2023) Association Between Diet and Fusobacterium nucleatum in the Feces of Healthy Adults: A Hospital-based Cross-sectional Study. Cancer Prevention Research (Philadelphia, Pa.). OF1-OF8
Salim F, Mizutani S, Zolfo M, et al. (2023) Recent advances of machine learning applications in human gut microbiota study: from observational analysis toward causal inference and clinical intervention. Current Opinion in Biotechnology. 79: 102884
Shimomura Y, Zha L, Komukai S, et al. (2022) Mediation effect of intestinal microbiota on the relationship between fiber intake and colorectal cancer. International Journal of Cancer
Narii N, Zha L, Sobue T, et al. (2022) Association between Diet and Fusobacterium nucleatum in the Feces of Healthy Adults: A hospital-based cross-sectional study. Cancer Prevention Research (Philadelphia, Pa.)
Nakamura Y, Suzuki S, Murakami S, et al. (2022) Integrated gut microbiome and metabolome analyses identified fecal biomarkers for bowel movement regulation by BB536 supplementation: A RCT. Computational and Structural Biotechnology Journal. 20: 5847-5858
Shiroma H, Shiba S, Erawijantari PP, et al. (2022) Surgical Treatment for Colorectal Cancer Partially Restores Gut Microbiome and Metabolome Traits. Msystems. 7: e0001822
Valles-Colomer M, Bacigalupe R, Vieira-Silva S, et al. (2021) Variation and transmission of the human gut microbiota across multiple familial generations. Nature Microbiology
Hayashi T, Yamashita T, Takahashi T, et al. (2021) Uncovering the Role of Gut Microbiota in Amino Acid Metabolic Disturbances in Heart Failure Through Metagenomic Analysis. Frontiers in Cardiovascular Medicine. 8: 789325
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