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Trey Ideker

Departments of Medicine and Bioengineering University of California, San Diego, La Jolla, CA 
computational biology
"Trey Ideker"


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Philipp A. Jaeger grad student UCSD School of Medicine (Neurotree)
Alice Yu grad student (MathTree)
Huajiang C. Mak grad student 2008 UCSD
Silpa Suthram grad student 2008 UCSD
Ryan M. Kelley grad student 2009 UCSD
Sourav Bandyopadhyay grad student 2010 UCSD
Han-Yu Chuang grad student 2010 UCSD
Paul D. Kuo grad student 2011 UCSD
Gregory J. Hannum grad student 2012 UCSD
Rohith K. Srivas grad student 2012 UCSD
Kai Tan post-doc UCSD
Chris Workman post-doc UCSD
Andreas Beyer post-doc 2006-2007 UCSD
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Martin-Sancho L, Lewinski MK, Pache L, et al. (2020) Functional Landscape of SARS-CoV-2 Cellular Restriction. Biorxiv : the Preprint Server For Biology
Silva E, Michaca M, Munson B, et al. (2020) Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response. G3 (Bethesda, Md.)
Wang T, Ma J, Hogan AN, et al. (2020) Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome. Cell Systems
Licon K, Shen JP, Munson BP, et al. (2019) Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate. Methods in Molecular Biology (Clifton, N.J.). 2049: 73-85
Chatterjee N, Pazarentzos E, Mayekar MK, et al. (2019) Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers. Cell Reports. 28: 2317-2330.e8
Buckley AR, Ideker T, Carter H, et al. (2019) Rare variant phasing using paired tumor:normal sequence data. Bmc Bioinformatics. 20: 265
Ideker T, Hood L. (2018) A Blueprint for Systems Biology. Clinical Chemistry
Buckley AR, Ideker T, Carter H, et al. (2018) Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas. Genome Medicine. 10: 69
Eckhardt M, Zhang W, Gross AM, et al. (2018) Multiple Routes to Oncogenesis are Promoted by the Human Papillomavirus-Host Protein Network. Cancer Discovery
Demchak B, Otasek D, Pico AR, et al. (2018) The Cytoscape Automation app article collection. F1000research. 7: 800
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