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Trey Ideker

Departments of Medicine and Bioengineering University of California, San Diego, La Jolla, CA 
computational biology
"Trey Ideker"


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Philipp A. Jaeger grad student UCSD School of Medicine (Neurotree)
Alice Yu grad student (MathTree)
Huajiang C. Mak grad student 2008 UCSD
Silpa Suthram grad student 2008 UCSD
Ryan M. Kelley grad student 2009 UCSD
Sourav Bandyopadhyay grad student 2010 UCSD
Han-Yu Chuang grad student 2010 UCSD
Paul D. Kuo grad student 2011 UCSD
Gregory J. Hannum grad student 2012 UCSD
Rohith K. Srivas grad student 2012 UCSD
Kai Tan post-doc UCSD
Chris Workman post-doc UCSD
Andreas Beyer post-doc 2006-2007 UCSD
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Silva E, Michaca M, Munson B, et al. (2020) Genome-Wide Dynamic Evaluation of the UV-Induced DNA Damage Response. G3 (Bethesda, Md.)
Gordon DE, Jang GM, Bouhaddou M, et al. (2020) A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature
Sun SM, Batté A, Tittel-Elmer M, et al. (2020) A genetic interaction map centered on cohesin reveals auxiliary factors in sister chromatid cohesion. Journal of Cell Science
Vakirlis N, Acar O, Hsu B, et al. (2020) De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. Nature Communications. 11: 781
Zheng F, Ono K, Silva E, et al. (2020) Abstract PR14: A multiscale map of recurrently mutated systems in cancer Cancer Research. 80
Kratz A, Zheng F, Kyu M, et al. (2020) Abstract PHB03: A hierarchical model of DNA repair inferred from omics-scale genetic interaction data reveals the dynamics of DNA damage induction Cancer Research. 80
Gordan JD, Pitea A, Eckhardt M, et al. (2020) Abstract 4891: Hepatitis B virus remodels host protein interaction networks to generate distinct cellular dependencies Cancer Research. 80: 4891-4891
Kuenzi BM, Park J, Fong S, et al. (2020) Abstract 1925: DrugCell: A visible neural network to guide personalized medicine Cancer Research. 80: 1925-1925
Kreisberg JF, Ideker T, Meric-Bernstam F, et al. (2020) Prospecting whole cancer genomes Nature Cancer. 1: 273-275
Licon K, Shen JP, Munson BP, et al. (2019) Ultrahigh-Density Screens for Genome-Wide Yeast EMAPs in a Single Plate. Methods in Molecular Biology (Clifton, N.J.). 2049: 73-85
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