Mark B. Gerstein

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
Website:
https://sites.gersteinlab.org/research/
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"Mark Gerstein"
Bio:

http://www.gersteinlab.org/

Cross-listing: Chemistry Tree

Parents

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Cyrus H. Chothia grad student 1993 Cambridge
Ruth M. Lynden-Bell grad student 1993 Cambridge (Chemistry Tree)
 (Protein recognition: surfaces and conformational change)
Michael Levitt post-doc 1993-1996 Stanford

Children

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Paul Bertone grad student Cambridge
Donghoon Lee grad student Yale
Werner G. Krebs grad student 1996-2001 Yale
Ronald Jansen grad student 2002 Yale
Rajdeep Das grad student 2003 Yale
Vadim Alexandrov grad student 2004 Yale
Dov Greenbaum grad student 2004 Yale
Haiyuan Yu grad student 2005 Yale
Thomas E. Royce grad student 2007 Yale
Michael R. Seringhaus grad student 2007 Yale
Samuel C. Flores grad student 2008 Yale
Tara A. Gianoulis grad student 2009 Yale
Yuk L. Yip grad student 2009 Yale
Jiang Du grad student 2010 Yale
Hugo Y. Lam grad student 2010 Yale
Prianka Patel grad student 2010 Yale
Chong Shou grad student 2011 Yale
Raymond K. Auerbach grad student 2012 Yale
Lukas Habegger grad student 2012 Yale
Xinmeng Mu grad student 2012 Yale
Yu Xia post-doc Yale
Gamze Gursoy post-doc 2016- Yale (BME Tree)
Xiangmeng Kong post-doc 2017- Yale (Chemistry Tree)
ZhaoLei Zhang post-doc 2001-2004 Yale (Chemistry Tree)
Alberto Paccanaro post-doc 2003-2006 Yale (Neurotree)
Jan O. Korbel post-doc 2005-2007 European Molecular Biology Laboratory (EMBL)
Yan Zhang post-doc 2012-2016 Yale (Chemistry Tree)
Xu Shi post-doc 2017-2019 Yale

Collaborators

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Diego Ariel Galeano collaborator (Neurotree)
BETA: Related publications

Publications

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Kumar S, Clarke D, Gerstein MB. (2019) Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures. Proceedings of the National Academy of Sciences of the United States of America
Navarro FC, Hoops J, Bellfy L, et al. (2019) TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements. Plos Computational Biology. 15: e1007293
Polioudakis D, de la Torre-Ubieta L, Langerman J, et al. (2019) A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation. Neuron
Chaisson MJP, Sanders AD, Zhao X, et al. (2019) Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature Communications. 10: 1784
Murillo OD, Thistlethwaite W, Rozowsky J, et al. (2019) exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids. Cell. 177: 463-477.e15
Das S, Ansel KM, et al. (2019) The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research. Cell. 177: 231-242
Li S, Gerstein MB. (2019) Next-Generation Sequencing to Diagnose Suspected Genetic Disorders. The New England Journal of Medicine. 380: 200
Wang D, Liu S, Warrell J, et al. (2018) Comprehensive functional genomic resource and integrative model for the human brain. Science (New York, N.Y.). 362
Li M, Santpere G, Imamura Kawasawa Y, et al. (2018) Integrative functional genomic analysis of human brain development and neuropsychiatric risks. Science (New York, N.Y.). 362
Shi W, Ng CKY, Lim RS, et al. (2018) Reliability of Whole-Exome Sequencing for Assessing Intratumor Genetic Heterogeneity. Cell Reports. 25: 1446-1457
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