Mark B. Gerstein
Affiliations: | Molecular Biophysics and Biochemistry | Yale University, New Haven, CT |
Area:
Computational Biology and BioinformaticsWebsite:
https://sites.gersteinlab.org/research/Google:
"Mark Gerstein"Bio:
http://www.gersteinlab.org/
Cross-listing: Chemistry Tree
Parents
Sign in to add mentorCyrus H. Chothia | grad student | 1993 | Cambridge | |
Ruth M. Lynden-Bell | grad student | 1993 | Cambridge (Chemistry Tree) | |
(Protein recognition: surfaces and conformational change) | ||||
Michael Levitt | post-doc | 1993-1996 | Stanford |
Children
Sign in to add traineePaul Bertone | grad student | Cambridge | |
Donghoon Lee | grad student | Yale | |
Werner G. Krebs | grad student | 1996-2001 | Yale |
Ronald Jansen | grad student | 2002 | Yale |
Rajdeep Das | grad student | 2003 | Yale |
Vadim Alexandrov | grad student | 2004 | Yale |
Dov Greenbaum | grad student | 2004 | Yale |
Haiyuan Yu | grad student | 2005 | Yale |
Thomas E. Royce | grad student | 2007 | Yale |
Michael R. Seringhaus | grad student | 2007 | Yale |
Samuel C. Flores | grad student | 2008 | Yale |
Tara A. Gianoulis | grad student | 2009 | Yale |
Yuk L. Yip | grad student | 2009 | Yale |
Jiang Du | grad student | 2010 | Yale |
Hugo Y. Lam | grad student | 2010 | Yale |
Prianka Patel | grad student | 2010 | Yale |
Chong Shou | grad student | 2011 | Yale |
Raymond K. Auerbach | grad student | 2012 | Yale |
Lukas Habegger | grad student | 2012 | Yale |
Xinmeng Mu | grad student | 2012 | Yale |
Jieming Chen | grad student | 2010-2016 | |
Yu Xia | post-doc | Yale | |
Gamze Gursoy | post-doc | 2016- | Yale (BME Tree) |
Xiangmeng Kong | post-doc | 2017- | Yale (Chemistry Tree) |
ZhaoLei Zhang | post-doc | 2001-2004 | Yale (Chemistry Tree) |
Alberto Paccanaro | post-doc | 2003-2006 | Yale (Neurotree) |
Jan O. Korbel | post-doc | 2005-2007 | European Molecular Biology Laboratory (EMBL) |
Yan Zhang | post-doc | 2012-2016 | Yale (Chemistry Tree) |
Xu Shi | post-doc | 2017-2019 | Yale |
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Publications
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Gaynor-Gillett SC, Cheng L, Shi M, et al. (2024) Validation of Enhancer Regions in Primary Human Neural Progenitor Cells using Capture STARR-seq. Biorxiv : the Preprint Server For Biology |
Emani PS, Liu JJ, Clarke D, et al. (2024) Single-cell genomics and regulatory networks for 388 human brains. Biorxiv : the Preprint Server For Biology |
Emani PS, Geradi MN, Gürsoy G, et al. (2023) Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases. Genome Research. 33: 2156-73 |
Greenbaum D, Gerstein M. (2023) Resisting efficiency's overreach Riverhead Books, 2023. 256 pp. Science (New York, N.Y.). 381: 1162 |
Greenbaum D, Gerstein M. (2023) Calculating the future Doubleday, 2023. 352 pp. Science (New York, N.Y.). 380: 589 |
Rozowsky J, Gao J, Borsari B, et al. (2023) The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models. Cell. 186: 1493-1511.e40 |
Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, et al. (2023) Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nature Genetics |
Sarkar E, Chielle E, Gursoy G, et al. (2023) Privacy-preserving cancer type prediction with homomorphic encryption. Scientific Reports. 13: 1661 |
Rheinbay E, Nielsen MM, Abascal F, et al. (2023) Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature |
Chen Z, Zhang B, Guo H, et al. (2023) Binding Peptide Generation for MHC Class I Proteins with Deep Reinforcement Learning. Bioinformatics (Oxford, England) |