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Mark B. Gerstein

Affiliations: 
Molecular Biophysics and Biochemistry Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
Website:
https://sites.gersteinlab.org/research/
Google:
"Mark Gerstein"
Bio:

http://www.gersteinlab.org/

Cross-listing: Chemistry Tree

Parents

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Cyrus H. Chothia grad student 1993 Cambridge
Ruth M. Lynden-Bell grad student 1993 Cambridge (Chemistry Tree)
 (Protein recognition: surfaces and conformational change)
Michael Levitt post-doc 1993-1996 Stanford

Children

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Paul Bertone grad student Cambridge
Donghoon Lee grad student Yale
Werner G. Krebs grad student 1996-2001 Yale
Ronald Jansen grad student 2002 Yale
Rajdeep Das grad student 2003 Yale
Vadim Alexandrov grad student 2004 Yale
Dov Greenbaum grad student 2004 Yale
Haiyuan Yu grad student 2005 Yale
Thomas E. Royce grad student 2007 Yale
Michael R. Seringhaus grad student 2007 Yale
Samuel C. Flores grad student 2008 Yale
Tara A. Gianoulis grad student 2009 Yale
Yuk L. Yip grad student 2009 Yale
Jiang Du grad student 2010 Yale
Hugo Y. Lam grad student 2010 Yale
Prianka Patel grad student 2010 Yale
Chong Shou grad student 2011 Yale
Raymond K. Auerbach grad student 2012 Yale
Lukas Habegger grad student 2012 Yale
Xinmeng Mu grad student 2012 Yale
Jieming Chen grad student 2010-2016
Yu Xia post-doc
Gamze Gursoy post-doc 2016- Yale (BME Tree)
Xiangmeng Kong post-doc 2017- Yale (Chemistry Tree)
ZhaoLei Zhang post-doc 2001-2004 Yale (Chemistry Tree)
Alberto Paccanaro post-doc 2003-2006 Yale (Neurotree)
Jan O. Korbel post-doc 2005-2007 European Molecular Biology Laboratory (EMBL)
Yan Zhang post-doc 2012-2016 Yale (Chemistry Tree)
Xu Shi post-doc 2017-2019 Yale

Collaborators

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Diego Ariel Galeano collaborator (Neurotree)
BETA: Related publications

Publications

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Ash GI, Stults-Kolehmainen M, Busa MA, et al. (2021) Establishing a Global Standard for Wearable Devices in Sport and Exercise Medicine: Perspectives from Academic and Industry Stakeholders. Sports Medicine (Auckland, N.Z.)
Amaya C, Cameron CJ, Devarkar SC, et al. (2021) Nodal modulator (NOMO) is required to sustain endoplasmic reticulum morphology. The Journal of Biological Chemistry. 100937
Koenig MJ, Agana BA, Kaufman JM, et al. (2021) STK11/LKB1 loss of function is associated with global DNA hypomethylation and S-adenosyl-methionine depletion in human lung adenocarcinoma. Cancer Research
Zhao X, Collins RL, Lee WP, et al. (2021) Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies. American Journal of Human Genetics
Ebert P, Audano PA, Zhu Q, et al. (2021) Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.)
Emani PS, Warrell J, Anticevic A, et al. (2021) Quantum computing at the frontiers of biological sciences. Nature Methods
Bailey MH, Meyerson WU, Dursi LJ, et al. (2020) Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. 11: 6232
Li B, Yang YT, Capra JA, et al. (2020) Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks. Plos Computational Biology. 16: e1008291
Kumar S, Harmanci A, Vytheeswaran J, et al. (2020) SVFX: a machine learning framework to quantify the pathogenicity of structural variants. Genome Biology. 21: 274
Bailey MH, Meyerson WU, Dursi LJ, et al. (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. 11: 4748
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