Rhiju Das

Affiliations: 
Biochemistry and Physics Stanford University, Palo Alto, CA 
Area:
predictive understanding of how biopolymer sequences code for biopolymer structures, with an initial focus on RNA
Website:
http://www.stanford.edu/~rhiju/index.html
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"Rhiju Das"
Bio:

http://www.stanford.edu/~rhiju/rhiju_cv.pdf

Cross-listing: Chemistry Tree

Parents

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Sebastian Doniach grad student 2001-2005 Stanford (Physics Tree)
Daniel Herschlag grad student 2001-2005 Department of Biochemistry Stanford University School of Medicine (Chemistry Tree)
 (Visualizing Forces and Folds of Self-Assembling RNA Molecules)
David Baker post-doc 2005-2008 University of Washington
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Publications

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Zhang K, Li S, Kappel K, et al. (2019) Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution. Nature Communications. 10: 5511
Magnus M, Kappel K, Das R, et al. (2019) RNA 3D structure prediction guided by independent folding of homologous sequences. Bmc Bioinformatics. 20: 512
Li X, Liu S, Zhang L, et al. (2019) A unified mechanism for intron and exon definition and back-splicing. Nature
Yesselman JD, Eiler D, Carlson ED, et al. (2019) Computational design of three-dimensional RNA structure and function. Nature Nanotechnology
Koirala D, Shao Y, Koldobskaya Y, et al. (2019) A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites. Nature Communications. 10: 3629
Yesselman JD, Denny SK, Bisaria N, et al. (2019) Sequence-dependent RNA helix conformational preferences predictably impact tertiary structure formation. Proceedings of the National Academy of Sciences of the United States of America
Wu MJ, Andreasson JO, Kladwang W, et al. (2019) Automated design of diverse stand-alone riboswitches. Acs Synthetic Biology
Jarmoskaite I, Denny SK, Vaidyanathan PP, et al. (2019) A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins. Molecular Cell
Kappel K, Jarmoskaite I, Vaidyanathan PP, et al. (2019) Blind tests of RNA-protein binding affinity prediction. Proceedings of the National Academy of Sciences of the United States of America
Hartwick EW, Costantino DA, MacFadden A, et al. (2018) Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels. Nature Communications. 9: 5074
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