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Thieker DF, Maguire JB, Kudlacek ST, et al. (2022) Stabilizing proteins, simplified: A Rosetta-based webtool for predicting favorable mutations. Protein Science : a Publication of the Protein Society. 31: e4428 |
Alford RF, Leaver-Fay A, Jeliazkov JR, et al. (2022) Correction to "The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design". Journal of Chemical Theory and Computation |
Albanese KI, Leaver-Fay A, Treacy JW, et al. (2022) Comparative Analysis of Sulfonium-π, Ammonium-π, and Sulfur-π Interactions and Relevance to SAM-Dependent Methyltransferases. Journal of the American Chemical Society |
Le KH, Adolf-Bryfogle J, Klima JC, et al. (2021) PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design. Biophysicist (Rockville, Md.). 2: 108-122 |
Koehler Leman J, Lyskov S, Lewis SM, et al. (2021) Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks. Nature Communications. 12: 6947 |
Leman JK, Weitzner BD, Lewis SM, et al. (2020) Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods |
Koehler Leman J, Weitzner BD, Renfrew PD, et al. (2020) Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507 |
Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Members of the RosettaCommons Consortium. Plos Computational Biology |
Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Details of Remaining Collective Challenges. Plos Computational Biology |
Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Commercial spin-off companies from the Rosetta community. Plos Computational Biology |