Ian Holmes, Ph.D.
Affiliations: | Bioengineering | University of California, Berkeley, Berkeley, CA, United States |
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"Ian Holmes"Cross-listing: Physics Tree - BME Tree
Parents
Sign in to add mentor| Richard Michael Durbin | grad student | The Wellcome Trust Sanger Institute | ||
| William Bruno | post-doc | UC Berkeley (Evolution Tree) | ||
| (1 year fellowship) | ||||
Children
Sign in to add trainee| Annabel Large | grad student | UC Berkeley (BME Tree) | |
| Robert K. Bradley | grad student | 2008 | UC Berkeley |
| Oscar Westesson | grad student | 2012 | UC Berkeley (Physics Tree) |
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Publications
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| Silvestre-Ryan J, Wang Y, Sharma M, et al. (2020) Machine Boss: Rapid Prototyping of Bioinformatic Automata. Bioinformatics (Oxford, England) |
| Buels R, Dider S, Diesh C, et al. (2019) Cram-JS: Reference-Based Decompression in Node and the Browser. Bioinformatics (Oxford, England) |
| Dunn NA, Unni DR, Diesh C, et al. (2019) Apollo: Democratizing genome annotation. Plos Computational Biology. 15: e1006790 |
| Dunn NA, Unni D, Diesh C, et al. (2019) Efficient curation of genome annotations through collaboration with Apollo F1000research. 8 |
| Holmes IH. (2017) Historian: accurate reconstruction of ancestral sequences and evolutionary rates. Bioinformatics (Oxford, England) |
| Dunn NA, Munoz-Torres MC, Unni D, et al. (2017) Apollo: collaborative and scalable manual genome annotation F1000research. 6 |
| Dunn N, Munoz-Torres M, Diesh C, et al. (2016) Apollo: collaborative manual annotation for genomic sequencing projects F1000research. 5 |
| Santiago-Ortiz J, Ojala DS, Westesson O, et al. (2015) AAV ancestral reconstruction library enables selection of broadly infectious viral variants. Gene Therapy |
| Ojala DS, Santiago-Ortiz J, Westesson O, et al. (2015) 260. AAV Ancestral Reconstruction Library Enables Selection of Broadly Infectious Viral Variants Molecular Therapy. 23 |
| Doss CR, Suchard MA, Holmes I, et al. (2013) Fitting Birth-Death Processes to Panel Data with Applications to Bacterial DNA Fingerprinting. The Annals of Applied Statistics. 7: 2315-2335 |