Zhong-Ru (Paul) Xie

Institute of Biomedical Sciences Academia Sinica, Taipei, Taipei City, Taiwan 
 Institute of Biomedical Informatics National Yang-Ming University, Allendale Charter Township, Taipei City, Taiwan 
 2012-2013 Skaggs School of Pharmacy and Pharmaceutical Sciences University of California, San Diego, La Jolla, CA 
 2013-2016 Department of Systems and Computational Biology Albert Einstein College of Medicine, New York, New York, United States 
 2016- College of Engineering University of Georgia, Athens, Athens, GA, United States 
Structural Bioinformatics, Computational Drug Discovery
"Zhong-Ru Xie"


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Ming-Jing Hwang grad student Academia Sinica, Taipei
Ruben Abagyan post-doc 2012-2013 UCSD
Yinghao Wu post-doc 2013-2016 (Chemistry Tree)
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Wu Y, Hsieh TC, Wu JM, et al. (2020) Elucidating the Inhibitory Effect of Resveratrol and Its Structural Analogs on Selected Nucleotide-Related Enzymes. Biomolecules. 10
Wu Y, Lou L, Xie ZR. (2020) A Pilot Study of All-Computational Drug Design Protocol-From Structure Prediction to Interaction Analysis. Frontiers in Chemistry. 8: 81
Wang B, Xie ZR, Chen J, et al. (2018) Integrating Structural Information to Study the Dynamics of Protein-Protein Interactions in Cells. Structure (London, England : 1993)
Xie ZR, Chen J, Wu Y. (2017) Predicting Protein-protein Association Rates using Coarse-grained Simulation and Machine Learning. Scientific Reports. 7: 46622
Chen J, Xie ZR, Wu Y. (2016) Understand protein functions by comparing the similarity of local structural environments. Biochimica Et Biophysica Acta
Chen J, Newhall J, Xie ZR, et al. (2016) A Computational Model for Kinetic Studies of Cadherin Binding and Clustering. Biophysical Journal. 111: 1507-1518
Chen J, Xie ZR, Wu Y. (2016) Elucidating the Functional Roles of Spatial Organization in Cross-Membrane Signal Transduction by a Hybrid Simulation Method. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology
Xie ZR, Chen J, Wu Y. (2016) A Multi-Scale Model for the Assembling Kinetics of Protein Complexes. The Journal of Physical Chemistry. B
Chen J, Xie ZR, Wu Y. (2015) Elucidating the general principles of cell adhesion with a coarse-grained simulation model. Molecular Biosystems
Chen J, Xie ZR, Wu Y. (2015) Study of protein structural deformations under external mechanical perturbations by a coarse-grained simulation method. Biomechanics and Modeling in Mechanobiology
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