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J. Andrew McCammon

University of California, San Diego, La Jolla, CA 
Statistical mechanics and computational chemistry, with applications to biological systems
"J. Andrew McCammon"

Cross-listing: Chemistry Tree


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John M. Deutch grad student 1976 Harvard (Chemistry Tree)
 (Hydrodynamics of biopolymers)
Martin Karplus post-doc 1976-1978 Harvard (Chemistry Tree)


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Peter Sims research assistant UCSD (Chemistry Tree)
Carlos Xavier Hernández research assistant 2012-2012 UCSD (Chemistry Tree)
William R Cannon grad student UCSD (Chemistry Tree)
Regis Pomes grad student University of Houston (Chemistry Tree)
John Tanner grad student UCSD (Neurotree)
Roberto Dias Lins grad student 1995-1999 UCSD (Chemistry Tree)
Kaihsu Tai grad student 2002 UCSD
Eric David Scheeff grad student 2003 UCSD (Chemistry Tree)
Jennifer M. Bui grad student 2005 UCSD
Dennis Stanley Law grad student 2005 UCSD (Chemistry Tree)
Alexander Luke Perryman grad student 2005 UCSD (Chemistry Tree)
Julie Schames Pressman grad student 2005 UCSD (Chemistry Tree)
Grace Yang grad student 2005 UCSD (Chemistry Tree)
Thuy Linh Dinh-Truong grad student 2006 UCSD (Chemistry Tree)
John Mongan grad student 2006 UCSD (Chemistry Tree)
Jessica M. Swanson grad student 2006 UCSD (Chemistry Tree)
David Cerutti grad student 2007 UCSD (Chemistry Tree)
Yuhui Cheng grad student 2007 UCSD
David Minh grad student 2007 UCSD (Chemistry Tree)
Arneh Babakhani grad student 2009 UCSD
Jacob Devin Durrant grad student 2010 UCSD (Chemistry Tree)
Mikolai Fajer grad student 2011 UCSD (Chemistry Tree)
Patricia M. Bauler grad student 2012 UCSD
William Sinko grad student 2012 UCSD (Chemistry Tree)
Paul M. Gasper grad student 2013 UCSD (Chemistry Tree)
Mehrnoosh Arrar grad student 2014 UCSD
Patrick G. Blachly grad student 2014 UCSD
Christopher T. Lee grad student 2013-2019 UCSD (Chemistry Tree)
Frank L. Brown post-doc (Chemistry Tree)
Richard H. Henchman post-doc UCSD (Chemistry Tree)
Tjerk Pieter Straatsma post-doc University of Houston (Chemistry Tree)
Rebecca C Wade post-doc
Peter M. Kekenes-Huskey post-doc 2010- UCSD (Chemistry Tree)
Scott Hayes Northrup post-doc 1979-1980 University of Houston (Chemistry Tree)
Jeffry D. Madura post-doc 1986-1990 University of Houston (Chemistry Tree)
Thanh N. Truong post-doc 1990-1992 University of Utah (Chemistry Tree)
James M. Briggs post-doc 1990-1994 University of Houston, TX (Chemistry Tree)
Michael K. Gilson post-doc 1991-1994 University of Houston (Chemistry Tree)
Heather A. Carlson post-doc 1997-2000 UCSD (Chemistry Tree)
Nathan Baker post-doc 2001-2002 UCSD (Cell Biology Tree)
Yingkai Zhang post-doc 2000-2003 UCSD (Chemistry Tree)
Jens E. Nielsen post-doc 2001-2003 Pharmacology, UCSD
Joachim Dzubiella post-doc 2004-2006 UCSD (Chemistry Tree)
Cameron Mura post-doc 2003-2007 UCSD (Chemistry Tree)
Ilja V. Khavrutskii post-doc 2007-2009 UCSD (Chemistry Tree)
Giulia Palermo post-doc 2016-2018 UCSD (Chemistry Tree)
Jung-Hsin Lin research scientist 2000-2002 UCSD (Chemistry Tree)
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Ahn SH, Ojha AA, Amaro RE, et al. (2021) Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling. Journal of Chemical Theory and Computation. 17: 7938-7951
Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature Chemistry
Sztain T, Amaro R, McCammon JA. (2021) Elucidation of Cryptic and Allosteric Pockets within the SARS-CoV-2 Main Protease. Journal of Chemical Information and Modeling
Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Biorxiv : the Preprint Server For Biology
Seitz C, Casalino L, Konecny R, et al. (2020) Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase. Biophysical Journal
McCabe KJ, Aboelkassem Y, Teitgen AE, et al. (2020) Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere. Archives of Biochemistry and Biophysics. 108582
Misson LE, Mindrebo JT, Davis TD, et al. (2020) Interfacial plasticity facilitates high reaction rate of FAS malonyl-CoA:ACP transacylase, FabD. Proceedings of the National Academy of Sciences of the United States of America
Sztain T, Amaro R, McCammon JA. (2020) Elucidation of cryptic and allosteric pockets within the SARS-CoV-2 protease. Biorxiv : the Preprint Server For Biology
Mindrebo JT, Patel A, Kim WE, et al. (2020) Gating mechanism of elongating β-ketoacyl-ACP synthases. Nature Communications. 11: 1727
Lee CT, Laughlin JG, Angliviel de La Beaumelle N, et al. (2020) 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. Plos Computational Biology. 16: e1007756
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