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Paul Pavlidis

Affiliations: 
University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Bioinformatics
Website:
http://bioinformatics.ubc.ca/pavlidis/
Google:
"Paul Pavlidis"
Cross-listing: Neurotree

Parents

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Mark Tanouye grad student 1991-1994 (FlyTree)
Daniel V. Madison post-doc Stanford (Neurotree)

Children

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Shamsuddin A. Bhuiyan grad student (Neurotree)
Nathaniel Lim grad student 2013- UBC (Neurotree)
Eric Chu grad student 2016- UBC (Neurotree)
Nivretta Thatra grad student 2016- UBC (Neurotree)
Alexander Morin grad student 2017- UBC (Neurotree)
Leon French grad student 2005-2012 (Neurotree)
Meeta Mistry grad student 2006-2012 UBC (Neurotree)
Nikolaus Fortelny grad student 2012-2016 University of Salzburg (Neurotree)
Daniel Lai grad student 2014-2016 UBC (Neurotree)
B. Ogan Mancarci grad student 2014-2018 UBC (Neurotree)
Marjan Farahbod grad student 2012-2019 UBC (Neurotree)
Lilach Toker post-doc UBC (Neurotree)
Shreejoy J. Tripathy post-doc 2014- Carnegie Mellon (Neurotree)
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Publications

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Morin A, Chu EC, Sharma A, et al. (2023) Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets. Genome Research. 33: 763-778
Novakovsky G, Sasaki S, Fornes O, et al. (2023) In silico discovery of small molecules for efficient stem cell differentiation into definitive endoderm. Stem Cell Reports
Chu EC, Morin A, Chang THC, et al. (2021) Experiment level curation of transcriptional regulatory interactions in neurodevelopment. Plos Computational Biology. 17: e1009484
Lim N, Pavlidis P. (2021) Evaluation of connectivity map shows limited reproducibility in drug repositioning. Scientific Reports. 11: 17624
Sicherman J, Newton DF, Pavlidis P, et al. (2021) Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. Frontiers in Molecular Neuroscience. 14: 637143
Lim N, Tesar S, Belmadani M, et al. (2021) Curation of over 10 000 transcriptomic studies to enable data reuse. Database : the Journal of Biological Databases and Curation
Farahbod M, Pavlidis P. (2020) Untangling the effects of cellular composition on coexpression analysis. Genome Research
Post KL, Belmadani M, Ganguly P, et al. (2020) Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction. Nature Communications. 11: 2073
Nagy C, Maitra M, Tanti A, et al. (2020) Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons. Nature Neuroscience
Boycott KM, Campeau PM, Howley HE, et al. (2020) The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes to Model Organisms. American Journal of Human Genetics. 106: 143-152
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