Douglas L. Brutlag

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Bioinformatics
Website:
http://cmgm.stanford.edu/~brutlag/index.html
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"Douglas Brutlag"
Bio:

http://cmgm.stanford.edu/biochem/CVs/Brutlag%20CV.pdf

Cross-listing: Chemistry Tree

Children

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Timothy Mark Nelson grad student 1980 Stanford (Plant Biology Tree)
Xiaole Liu grad student 2002 Stanford (Chemistry Tree)
Scott C. Schmidler grad student 2002 Stanford (Chemistry Tree)
Mehmet S. Apaydin grad student 2004 Stanford (Chemistry Tree)
Jessica Ebert grad student 2005 Stanford (Chemistry Tree)
Brian T. Naughton grad student 2006 Stanford (Chemistry Tree)
Serge Saxonov grad student 2006 Stanford (Chemistry Tree)
Craig Nevill-Manning post-doc 1996-1998 Stanford (Chemistry Tree)
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Publications

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Chiang TH, Apaydin MS, Brutlag DL, et al. (2007) Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 578-93
Huang X, Brutlag DL. (2007) Dynamic use of multiple parameter sets in sequence alignment. Nucleic Acids Research. 35: 678-86
Naughton BT, Fratkin E, Batzoglou S, et al. (2006) A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites. Nucleic Acids Research. 34: 5730-9
Fratkin E, Naughton BT, Brutlag DL, et al. (2006) MotifCut: regulatory motifs finding with maximum density subgraphs. Bioinformatics (Oxford, England). 22: e150-7
Ebert J, Brutlag D. (2006) Development and validation of a consistency based multiple structure alignment algorithm. Bioinformatics (Oxford, England). 22: 1080-7
Saxonov S, Berg P, Brutlag DL. (2006) A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proceedings of the National Academy of Sciences of the United States of America. 103: 1412-7
Tellez AB, Crowder S, Spagnolo JF, et al. (2006) Nucleotide channel of RNA-dependent RNA polymerase used for intermolecular uridylylation of protein primer. Journal of Molecular Biology. 357: 665-75
Chiang TH, Apaydin MS, Brutlag DL, et al. (2006) Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 410-424
Bertaccini EJ, Shapiro J, Brutlag DL, et al. (2005) Homology modeling of a human glycine alpha 1 receptor reveals a plausible anesthetic binding site. Journal of Chemical Information and Modeling. 45: 128-35
Su QJ, Lu L, Saxonov S, et al. (2005) eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity. Nucleic Acids Research. 33: D178-82
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