Sidhartha Chaudhury, Ph.D.

2010 Johns Hopkins University, Baltimore, MD 
General Biophysics, Biochemistry, Bioinformatics Biology
"Sidhartha Chaudhury"


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Jeffrey J. Gray grad student 2010 Johns Hopkins
 (Using computational protein docking to model the structure and specificity of protein interactions.)
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Chaudhury S, Ockenhouse CF, Regules JA, et al. (2016) The biological function of antibodies induced by the RTS,S/AS01 malaria vaccine candidate is determined by their fine specificity. Malaria Journal. 15: 301
Loers G, Saini V, Mishra B, et al. (2015) Vinorelbine and epirubicin share common features with polysialic acid and modulate neuronal and glial functions. Journal of Neurochemistry
Munagala S, Sirasani G, Kokkonda P, et al. (2014) Synthesis and evaluation of Strychnos alkaloids as MDR reversal agents for cancer cell eradication. Bioorganic & Medicinal Chemistry. 22: 1148-55
Loers G, Saini V, Mishra B, et al. (2014) Nonyloxytryptamine mimics polysialic acid and modulates neuronal and glial functions in cell culture. Journal of Neurochemistry. 128: 88-100
Chaudhury S, Abdulhameed MD, Singh N, et al. (2013) Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction. Plos One. 8: e63369
Singh N, Chaudhury S, Liu R, et al. (2012) QSAR classification model for antibacterial compounds and its use in virtual screening. Journal of Chemical Information and Modeling. 52: 2559-69
Singh N, Sun H, Chaudhury S, et al. (2012) A physicochemical descriptor-based scoring scheme for effective and rapid filtering of kinase-like chemical space. Journal of Cheminformatics. 4: 4
AbdulHameed MD, Chaudhury S, Singh N, et al. (2012) Exploring polypharmacology using a ROCS-based target fishing approach. Journal of Chemical Information and Modeling. 52: 492-505
Chaudhury S, Berrondo M, Weitzner BD, et al. (2011) Benchmarking and analysis of protein docking performance in Rosetta v3.2. Plos One. 6: e22477
Olson MA, Chaudhury S, Lee MS. (2011) Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations. Journal of Computational Chemistry. 32: 3014-22
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