Jonathan Monk

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2015 University of California, San Diego, La Jolla, CA 
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"Jonathan Monk"
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Publications

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Hawkey J, Monk JM, Billman-Jacobe H, et al. (2020) Impact of insertion sequences on convergent evolution of Shigella species. Plos Genetics. 16: e1008931
Kavvas ES, Yang L, Monk JM, et al. (2020) A biochemically-interpretable machine learning classifier for microbial GWAS. Nature Communications. 11: 2580
Sales MJ, Sakoulas G, Szubin R, et al. (2020) Genome Sequence Comparison of Staphylococcus aureus TX0117 and a Beta-Lactamase-Cured Derivative Shows Increased Cationic Peptide Resistance Accompanying Mutations in and . Microbiology Resource Announcements. 9
Mih N, Monk JM, Fang X, et al. (2020) Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. Bmc Bioinformatics. 21: 162
Lieven C, Beber ME, Olivier BG, et al. (2020) Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 38: 504
Jensen CS, Norsigian CJ, Fang X, et al. (2020) Reconstruction and Validation of a Genome-Scale Metabolic Model of (iCJ415), a Human Commensal and Opportunistic Pathogen. Frontiers in Genetics. 11: 116
Lieven C, Beber ME, Olivier BG, et al. (2020) MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology
Hyun JC, Kavvas ES, Monk JM, et al. (2020) Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. Plos Computational Biology. 16: e1007608
Miller CR, Dey S, Smolenski PD, et al. (2020) Distinct Subpopulations of Intravalvular Methicillin-Resistant With Variable Susceptibility to Daptomycin in Tricuspid Valve Endocarditis. Antimicrobial Agents and Chemotherapy
Norsigian CJ, Fang X, Seif Y, et al. (2019) A workflow for generating multi-strain genome-scale metabolic models of prokaryotes. Nature Protocols
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