Yaping Liu, Ph.D.

Affiliations: 
2004-2008 Nanjing University, Nanjing Shi, Jiangsu Sheng, China 
 2009-2014 University of Southern California, Los Angeles, CA, United States 
 2019- Cincinnati Children's Hospital Medical Center, University of Cincinnati 
Area:
Epigenomics, Computational Biology
Website:
https://epifluidlab.github.io/
Google:
"Yaping Liu"

Parents

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Peter W. Laird grad student 2009-2011 USC Keck School of Medicine (Cell Biology Tree)
Benjamin P. Berman grad student 2009-2014 USC Keck School of Medicine (FlyTree)
Manolis Kellis post-doc 2014-2017 MIT

Collaborators

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Bing Ren collaborator 2015- (Chemistry Tree)
Peter A. Jones collaborator 2011-2014 USC Keck School of Medicine (Neurotree)
BETA: Related publications

Publications

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Fu H, Zheng H, Chen X, et al. (2023) NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule. Genome Biology. 24: 50
Liu Y. (2021) At the dawn: cell-free DNA fragmentomics and gene regulation. British Journal of Cancer
Zheng H, Zhu MS, Liu Y. (2020) FinaleDB: a browser and database of cell-free DNA fragmentation patterns. Bioinformatics (Oxford, England)
Wan N, Weinberg D, Liu TY, et al. (2019) Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA. Bmc Cancer. 19: 832
Li G, Liu Y, Zhang Y, et al. (2019) Joint profiling of DNA methylation and chromatin architecture in single cells. Nature Methods
Liu Y, Liu T, Weinberg D, et al. (2019) Abstract 5177: Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissue-of-origin Cancer Research
Wan N, Weinberg D, Liu T, et al. (2019) Su1658 – Machine Learning Enables Detection of Early-Stage Colorectal Cancer by Whole-Genome Sequencing of Plasma Cell-Free Dna Gastroenterology. 156
Luo H, Xi Y, Li W, et al. (2017) Cell identity bookmarking through heterogeneous chromatin landscape maintenance during the cell cycle. Human Molecular Genetics. 26: 4231-4243
Liu Y, Sarkar A, Kheradpour P, et al. (2017) Evidence of reduced recombination rate in human regulatory domains. Genome Biology. 18: 193
Liu Y, Reed S, Choudhury AD, et al. (2017) Abstract 5689: Identify tissue-of-origin in cancer cfDNA by whole genome sequencing Cancer Research. 77: 5689-5689
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