Yaping Liu, Ph.D.
Affiliations: | 2004-2008 | Nanjing University, Nanjing Shi, Jiangsu Sheng, China | |
| 2009-2014 | University of Southern California, Los Angeles, CA, United States | ||
| 2019- | Cincinnati Children's Hospital Medical Center, University of Cincinnati |
Area:
Epigenomics, Computational BiologyWebsite:
https://epifluidlab.github.io/Google:
"Yaping Liu"Parents
Sign in to add mentor| Peter W. Laird | grad student | 2009-2011 | USC Keck School of Medicine (Cell Biology Tree) |
| Benjamin P. Berman | grad student | 2009-2014 | USC Keck School of Medicine (FlyTree) |
| Manolis Kellis | post-doc | 2014-2017 | MIT |
Collaborators
Sign in to add collaborator| Bing Ren | collaborator | 2015- | (Chemistry Tree) |
| Peter A. Jones | collaborator | 2011-2014 | USC Keck School of Medicine (Neurotree) |
BETA: Related publications
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Publications
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| Tian H, Luan P, Liu Y, et al. (2024) Tet-mediated DNA methylation dynamics affect chromosome organization. Nucleic Acids Research |
| Liu Y, Reed SC, Lo C, et al. (2024) FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA. Biorxiv : the Preprint Server For Biology |
| Fu H, Zheng H, Chen X, et al. (2023) NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule. Genome Biology. 24: 50 |
| Liu Y. (2021) At the dawn: cell-free DNA fragmentomics and gene regulation. British Journal of Cancer |
| Zheng H, Zhu MS, Liu Y. (2020) FinaleDB: a browser and database of cell-free DNA fragmentation patterns. Bioinformatics (Oxford, England) |
| Wan N, Weinberg D, Liu TY, et al. (2019) Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA. Bmc Cancer. 19: 832 |
| Li G, Liu Y, Zhang Y, et al. (2019) Joint profiling of DNA methylation and chromatin architecture in single cells. Nature Methods |
| Liu Y, Liu T, Weinberg D, et al. (2019) Abstract 5177: Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissue-of-origin Cancer Research |
| Wan N, Weinberg D, Liu T, et al. (2019) Su1658 – Machine Learning Enables Detection of Early-Stage Colorectal Cancer by Whole-Genome Sequencing of Plasma Cell-Free Dna Gastroenterology. 156 |
| Luo H, Xi Y, Li W, et al. (2017) Cell identity bookmarking through heterogeneous chromatin landscape maintenance during the cell cycle. Human Molecular Genetics. 26: 4231-4243 |