Manolis Kellis

CSAIL Massachusetts Institute of Technology, Cambridge, MA, United States 
"Manolis Kellis"


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Bonnie Berger grad student 2000-2003 MIT
Eric Lander grad student 2000-2003 MIT (MathTree)


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Robert C. Altshuler grad student MIT
Ferhat Ay grad student MIT (Computer Science Tree)
Luis Barrera grad student MIT
Soheil Feizi grad student MIT
Pouya Kheradpour grad student MIT
Matthew Rasmussen grad student MIT
Abhishek Sarkar grad student MIT
Rachel Sealfon grad student MIT
Xinchen Wang grad student MIT
Jessica Wu grad student MIT
Angela Yen grad student MIT
Mukul S. Bansal post-doc MIT
Jose Davila-Velderrain post-doc
Abdoulaye Diallo post-doc MIT
Jason Ernst post-doc MIT (Computer Science Tree)
Loyal A. Goff post-doc MIT
Ah-Ram Kim post-doc MIT (FlyTree)
Dinesh Kumar post-doc MIT
Daniel Marbach post-doc MIT
Wouter Meuleman post-doc MIT
Patrick E. Meyer post-doc MIT
Eva Maria Novoa post-doc MIT
Andreas R. Pfenning post-doc MIT (Neurotree)
Gerald Quon post-doc MIT (Neurotree)
Sushmita Roy post-doc MIT (MathTree)
Richard Sallari post-doc MIT
Jianrong Wang post-doc MIT
Stefan Washietl post-doc MIT
Robert Waterhouse post-doc MIT
Zhizhuo Zhang post-doc MIT
Yaping Liu post-doc 2014- MIT
Christopher Aaron Bristow post-doc 2009-2012 MIT (Chemistry Tree)
David A. Hendrix post-doc 2010-2013 MIT (Physics Tree)
Lucas D. Ward post-doc 2010-2014 MIT
Melina Claussnitzer research scientist MIT
Irwin Jungreis research scientist MIT
Anshul Kundaje research scientist 2012-2014 MIT (Computer Science Tree)
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Shi A, Kasumova GG, Michaud WA, et al. (2020) Plasma-derived extracellular vesicle analysis and deconvolution enable prediction and tracking of melanoma checkpoint blockade outcome. Science Advances. 6
Mohammadi S, Davila-Velderrain J, Kellis M. (2020) A multiresolution framework to characterize single-cell state landscapes. Nature Communications. 11: 5399
Kousi M, Söylemez O, Ozanturk A, et al. (2020) Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy. Nature Genetics
Jungreis I, Sealfon R, Kellis M. (2020) SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes. Research Square
Marco A, Meharena HS, Dileep V, et al. (2020) Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble. Nature Neuroscience
Sun C, Huang J, Wang Y, et al. (2020) Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution
Berger E, Yorukoglu D, Zhang L, et al. (2020) Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets. Nature Communications. 11: 4662
Moore JE, Purcaro MJ, et al. (2020) Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710
Eisenberg AR, Higdon AL, Hollerer I, et al. (2020) Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast. Cell Systems
Lee H, Fenster RJ, Pineda SS, et al. (2020) Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation. Neuron
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