Bonnie Berger
Affiliations: | EECS | Massachusetts Institute of Technology, Cambridge, MA, United States |
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"Bonnie Berger"Parents
Sign in to add mentor| Daniel J. Kleitman | grad student | (MathTree) | |
| Silvio Micali | grad student | MIT (Computer Science Tree) |
Children
Sign in to add trainee| Michael Baym | grad student | ||
| Russell Schwartz | grad student | MIT | |
| Lisa C. Tucker-Kellogg | grad student | 1991-1993 | (Neurotree) |
| Mona Singh | grad student | 1990-1995 | MIT (Computer Science Tree) |
| Lior Pachter | grad student | 1994-1999 | MIT (Evolution Tree) |
| Manolis Kellis | grad student | 2000-2003 | MIT |
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Publications
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| Berger E, Yorukoglu D, Zhang L, et al. (2020) Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets. Nature Communications. 11: 4662 |
| Cho H, DeMeo B, Peng J, et al. (2019) Large-Margin Classification in Hyperbolic Space. Proceedings of Machine Learning Research. 89: 1832-1840 |
| Cho H, Berger B, Peng J, et al. (2018) Principles of Systems Biology, No. 31. Cell Systems. 7: 133-135 |
| Luo Y, Yu YW, Zeng J, et al. (2018) Metagenomic binning through low-density hashing. Bioinformatics (Oxford, England) |
| Cho H, Berger B, Peng J. (2018) Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks. Cell Systems |
| Cho H, Berger B, Peng J. (2018) Generalizable visualization of mega-scale single-cell data. Research in Computational Molecular Biology : ... Annual International Conference, Recomb ... : Proceedings. Recomb (Conference : 2005-). 10812: 251-253 |
| Liu Y, Palmedo P, Ye Q, et al. (2017) Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks. Cell Systems |
| Khurana V, Peng J, Chung CY, et al. (2017) Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways. Cell Systems |
| Ma CY, Phoebe Chen YP, Berger B, et al. (2017) Identification of Protein Complexes by Integrating Multiple Alignment of Protein Interaction Networks. Bioinformatics (Oxford, England) |
| Berger B, Daniels NM, Yu YW. (2016) Algorithmic advances take advantage of the structure of massive biological data landscape: Computational Biology in the 21(st) Century: Scaling with Compressive Algorithms. Communications of the Acm. 59: 72-80 |