Bonnie Berger
Affiliations: | 1992- | Mathematics | Massachusetts Institute of Technology, Cambridge, MA, United States |
Area:
Theoretical Computer Science, Computational Biological Modeling, Computational BiologyWebsite:
https://math.mit.edu/directory/profile.html?pid=20Google:
""Bonnie Anne Berger MIT""Bio:
https://scholar.google.com/citations?user=bYjKaowAAAAJ&hl=en
https://people.csail.mit.edu/silvio/CV.pdf
Parents
Sign in to add mentor| Silvio Micali | grad student | 1990 | MIT (Computer Science Tree) | |
| (Using Randomness to Design Efficient Deterministic Algorithms) | ||||
Children
Sign in to add trainee| Lisa C. Tucker-Kellogg | research assistant | 1991-1993 | (Neurotree) |
| Michael Baym | grad student | ||
| Baris Ekim | grad student | MIT | |
| Russell Schwartz | grad student | MIT | |
| Mona Singh | grad student | 1990-1995 | MIT (Computer Science Tree) |
| Lior Pachter | grad student | 1994-1999 | MIT (Evolution Tree) |
| Manolis Kellis | grad student | 2000-2003 | MIT |
BETA: Related publications
See more...
Publications
|
You can help our author matching system! If you notice any publications incorrectly attributed to this author, please sign in and mark matches as correct or incorrect. |
| Battistella E, Maheshwari A, Ekim B, et al. (2025) ralphi: a deep reinforcement learning framework for haplotype assembly. Biorxiv : the Preprint Server For Biology |
| Singh M, Sahinalp C, Zeng J, et al. (2024) How has the AI boom impacted algorithmic biology? Cell Systems. 15: 483-487 |
| Pellow D, Pu L, Ekim B, et al. (2023) Efficient minimizer orders for large values of using minimum decycling sets. Genome Research |
| Ekim B, Sahlin K, Medvedev P, et al. (2023) Efficient mapping of accurate long reads in minimizer space with mapquik. Genome Research |
| Berger B, Yu YW. (2022) Navigating bottlenecks and trade-offs in genomic data analysis. Nature Reviews. Genetics |
| Zaman S, Sledzieski S, Berger B, et al. (2022) virDTL: Viral Recombination Analysis Through Phylogenetic Reconciliation and Its Application to Sarbecoviruses and SARS-CoV-2. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Singh R, Devkota K, Sledzieski S, et al. (2022) Topsy-Turvy: integrating a global view into sequence-based PPI prediction. Bioinformatics (Oxford, England). 38: i264-i272 |
| Ekim B, Berger B, Chikhi R. (2021) Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer. Cell Systems |
| Ekim B, Berger B, Orenstein Y. (2020) A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets. Research in Computational Molecular Biology : ... Annual International Conference, Recomb ... : Proceedings. Recomb (Conference : 2005- ). 12074: 37-53 |
| Berger E, Yorukoglu D, Zhang L, et al. (2020) Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets. Nature Communications. 11: 4662 |