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James J. Collins, PhD

Affiliations: 
Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Systems Biology, Synthetic Biology
Website:
http://collinslab.mit.edu/
Google:
"James Collins"
Bio:

https://en.wikipedia.org/wiki/James_Collins_(bioengineer)

Cross-listing: Chemistry Tree - Neurotree - Cell Biology Tree

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Parents

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John O’Connor grad student Oxford (Chemistry Tree)

Children

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Meagan Hamblin research assistant (ID Tree)
Nima Dehghani grad student Boston University (Neurotree)
Timothy S. Gardner grad student 2000 Boston University (Cell Biology Tree)
Kristen A. Richardson grad student 2001 Boston University (Neurotree)
Anthony P. Scinicariello grad student 2002 Boston University
William J. Blake grad student 2003 Boston University
Farren Isaacs grad student 2003 Boston University (Neurotree)
Attila A. Priplata grad student 2005 Boston University
Nicholas J. Guido grad student 2006 Boston University
Daniel John Dwyer grad student 2007 Boston University
Boris Hayete grad student 2007 Boston University
Timothy K. Lu grad student 2008 Harvard-MIT Division of Health Sciences and Technology (Chemistry Tree)
Kevin F. Murphy grad student 2008 Boston University (Cell Biology Tree)
Tara L. Deans grad student 2009 Boston University
Michael A. Kohanski grad student 2009 Boston University
David R. Lorenz grad student 2009 Boston University
Ayla Ergun grad student 2010 Boston University
Ari E. Friedland grad student 2010 Boston University
Michael S. Koris grad student 2010 Boston University
Carolyn A. Lawrence grad student 2010 Boston University
Ellen C. O'Shaughnessy grad student 2010 Boston University
Jarred M. Callura grad student 2012 Boston University
Devora Cohen-Karni grad student 2012 Boston University
Alexander M. Fichtenholtz grad student 2012 Boston University
Henry Hung-Yi Lee grad student 2012 Boston University (Cell Biology Tree)
Kevin D. Litcofsky grad student 2012 Boston University
Jonathan Alexander Winkler grad student 2012 Boston University (Cell Biology Tree)
Kyle R. Allison grad student 2013 Boston University
Sheetal Modi grad student 2013 Boston University
Catherine S. Spina grad student 2013 Boston University
Nicole M. Vega grad student 2013 Boston University
Raffi B. Afeyan grad student 2014 Boston University
Hu Li post-doc MIT (Neurotree)
Allison Lopatkin post-doc MIT (BME Tree)
Emma J Chory post-doc 2018- MIT (Chemistry Tree)
Daichi Nozaki post-doc 1997-1998 (Neurotree)
Mark P. Brynildsen post-doc 2008-2010 Boston University (Chemistry Tree)
Jason H. Yang post-doc 2012-2019 MIT
Xuejun Zhu post-doc 2017-2019 MIT (Chemistry Tree)

Collaborators

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Publications

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Doulatov S, Vo LT, Chou SS, et al. (2025) Induction of Multipotential Hematopoietic Progenitors from Human Pluripotent Stem Cells via Respecification of Lineage-Restricted Precursors. Cell Stem Cell
Wan F, Wong F, Collins JJ, et al. (2024) Machine learning for antimicrobial peptide identification and design. Nature Reviews Bioengineering. 2: 392-407
Ofori-Anyinam B, Hamblin M, Coldren ML, et al. (2024) Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline. Nature Communications. 15: 9792
Kuru E, Rittichier J, de Puig H, et al. (2024) Rapid discovery and evolution of nanosensors containing fluorogenic amino acids. Nature Communications. 15: 7531
Wong F, de la Fuente-Nunez C, Collins JJ. (2023) Leveraging artificial intelligence in the fight against infectious diseases. Science (New York, N.Y.). 381: 164-170
Valeri JA, Soenksen LR, Collins KM, et al. (2023) BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell Systems. 14: 525-542.e9
Phillips EA, Silverman AD, Joneja A, et al. (2023) Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes. Nature Biomedical Engineering
Cabera A, Edelstein HI, Glykofrydis F, et al. (2022) The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems. 13: 950-973
Sun Q, Vega NM, Cervantes B, et al. (2022) Enhancing nutritional niche and host defenses by modifying the gut microbiome. Molecular Systems Biology. 18: e9933
Warrier T, El Farran C, Zeng Y, et al. (2022) SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates. Nucleic Acids Research
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