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| Whelan S, Allen JE, Blackburne BP, et al. (2015) ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models. Systematic Biology. 64: 42-55 |
| Allen JE, Whelan S. (2014) Assessing the state of substitution models describing noncoding RNA evolution. Genome Biology and Evolution. 6: 65-75 |