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| Medlar AJ, Törönen P, Holm L. (2018) AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination. Nucleic Acids Research |
| Törönen P, Medlar A, Holm L. (2018) PANNZER2: a rapid functional annotation web server. Nucleic Acids Research |
| Aivelo T, Medlar A, Löytynoja A, et al. (2018) Metabarcoding Gastrointestinal Nematodes in Sympatric Endemic and Nonendemic Species in Ranomafana National Park, Madagascar International Journal of Primatology. 39: 49-64 |
| Aivelo T, Medlar A. (2017) Opportunities and challenges in metabarcoding approaches for helminth community identification in wild mammals. Parasitology. 1-14 |
| Medlar A, Törönen P, Zosa E, et al. (2017) PANNZER 2: annotate a complete proteome in minutes! F1000research. 6 |
| Mishra PP, Medlar A, Holm L, et al. (2016) Robust multi-group gene set analysis with few replicates. Bmc Bioinformatics. 17: 526 |
| Veidenberg A, Medlar A, Löytynoja A. (2015) Wasabi: an integrated platform for evolutionary sequence analysis and data visualisation. Molecular Biology and Evolution |
| Aivelo T, Medlar A, Löytynoja A, et al. (2015) Tracking year-to-year changes in intestinal nematode communities of rufous mouse lemurs (Microcebus rufus). Parasitology. 142: 1095-107 |
| Aivelo T, Medlar A, Löytynoja A, et al. (2015) Tracking year-to-year changes in intestinal nematode communities of rufous mouse lemurs (Microcebus rufus) Parasitology. 142: 1095-1107 |
| Medlar A, Aivelo T, Löytynoja A. (2014) Séance: reference-based phylogenetic analysis for 18S rRNA studies. Bmc Evolutionary Biology. 14: 235 |