Alan P Boyle
Affiliations: | University of Michigan, Ann Arbor, Ann Arbor, MI |
Area:
Computational Biology, Genomics, Human GeneticsGoogle:
"Alan Boyle"Parents
Sign in to add mentor| Gregory E Crawford | grad student | 2005-2010 | Duke |
| Terrence S. Furey | grad student | 2005-2010 | Duke |
| Michael Snyder | post-doc | 2010-2014 | Stanford |
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Publications
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| McAfee JC, Lee S, Lee J, et al. (2023) Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants. Cell Genomics. 3: 100404 |
| Nishizaki SS, Boyle AP. (2022) SEMplMe: a tool for integrating DNA methylation effects in transcription factor binding affinity predictions. Bmc Bioinformatics. 23: 317 |
| Qin T, Lee C, Li S, et al. (2022) Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data. Genome Biology. 23: 105 |
| Dong S, Boyle AP. (2021) Prioritization of regulatory variants with tissue-specific function in the non-coding regions of human genome. Nucleic Acids Research |
| McDonald TL, Zhou W, Castro CP, et al. (2021) Cas9 targeted enrichment of mobile elements using nanopore sequencing. Nature Communications. 12: 3586 |
| Tsuzuki M, Sethuraman S, Coke AN, et al. (2020) Broad noncoding transcription suggests genome surveillance by RNA polymerase V. Proceedings of the National Academy of Sciences of the United States of America |
| Diehl AG, Boyle AP. (2020) MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony. Bmc Bioinformatics. 21: 416 |
| Ouyang N, Boyle AP. (2020) TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence. Genome Research |
| Diehl AG, Ouyang N, Boyle AP. (2020) Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomes. Nature Communications. 11: 1796 |
| Lee CT, Cavalcante RG, Lee C, et al. (2020) Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions. Nar Genomics and Bioinformatics. 2: lqaa006 |