Alan P Boyle

University of Michigan, Ann Arbor, Ann Arbor, MI 
Computational Biology, Genomics, Human Genetics
"Alan Boyle"


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Gregory E Crawford grad student 2005-2010 Duke
Terrence S. Furey grad student 2005-2010 Duke
Michael Snyder post-doc 2010-2014 Stanford
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Amemiya HM, Kundaje A, Boyle AP. (2019) The ENCODE Blacklist: Identification of Problematic Regions of the Genome. Scientific Reports. 9: 9354
Varshney A, VanRenterghem H, Orchard P, et al. (2018) Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression. Genetics
Araya CL, Kawli T, Kundaje A, et al. (2015) Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature
Phanstiel DH, Boyle AP, Heidari N, et al. (2015) Mango: A bias correcting ChIA-PET analysis pipeline. Bioinformatics (Oxford, England)
Cheng Y, Ma Z, Kim BH, et al. (2014) Principles of regulatory information conservation between mouse and human. Nature. 515: 371-5
Yue F, Cheng Y, Breschi A, et al. (2014) A comparative encyclopedia of DNA elements in the mouse genome. Nature. 515: 355-64
Boyle AP, Araya CL, Brdlik C, et al. (2014) Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6
Araya CL, Kawli T, Kundaje A, et al. (2014) Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5
Phanstiel DH, Boyle AP, Araya CL, et al. (2014) Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures. Bioinformatics (Oxford, England). 30: 2808-10
Xie D, Boyle AP, Wu L, et al. (2013) Dynamic trans-acting factor colocalization in human cells. Cell. 155: 713-24
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