Marcin J. Skwark, Ph.D.

2017- Biochemistry University of Cambridge, Cambridge, England, United Kingdom 
protein structure prediction, bioinformatics, drug discovery
"Marcin J. Skwark"
Cross-listing: Physics Tree - Chemistry Tree - Computer Science Tree


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Arne Elofsson grad student 2008-2013 Stockholm University (Chemistry Tree)
Tom Blundell post-doc 2017- Cambridge
Erik Aurell post-doc 2013-2015 Aalto University (Physics Tree)
Jens Meiler post-doc 2015-2017 Vanderbilt
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Vedithi SC, Malhotra S, Skwark MJ, et al. (2020) HARP: a database of structural impacts of systematic missense mutations in drug targets of . Computational and Structural Biotechnology Journal. 18: 3692-3704
Vedithi SC, Rodrigues CHM, Portelli S, et al. (2020) Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in . Computational and Structural Biotechnology Journal. 18: 271-286
Sillitoe I, Andreeva A, Blundell TL, et al. (2019) Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. Nucleic Acids Research
Skwark MJ, Torres PHM, Copoiu L, et al. (2019) Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus. Database : the Journal of Biological Databases and Curation. 2019
Waman VP, Vedithi SC, Thomas SE, et al. (2019) Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery. Emerging Microbes & Infections. 8: 109-118
Teixeira PL, Mendenhall JL, Heinze S, et al. (2017) Membrane protein contact and structure prediction using co-evolution in conjunction with machine learning. Plos One. 12: e0177866
Michel M, Skwark MJ, Menéndez Hurtado D, et al. (2017) Predicting accurate contacts in thousands of Pfam domain families using PconsC3. Bioinformatics (Oxford, England)
Skwark MJ, Croucher NJ, Puranen S, et al. (2017) Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. Plos Genetics. 13: e1006508
Borza CM, Su Y, Tran TL, et al. (2016) Discoidin domain receptor 1 kinase activity is required for regulating collagen IV synthesis. Matrix Biology : Journal of the International Society For Matrix Biology
Skwark MJ, Raimondi D, Michel M, et al. (2014) Improved contact predictions using the recognition of protein like contact patterns. Plos Computational Biology. 10: e1003889
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