Parents
Sign in to add mentor| Sallie W. Chisholm | grad student | MIT (Evolution Tree) | ||
| Andrej Sali | grad student | 2008 | UCSF | |
| (Functional hotspots revealed by mutational, evolutionary, and structural characterization of ABC transporters.) | ||||
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Publications
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| Flamholz ZN, Biller SJ, Kelly L. (2024) Large language models improve annotation of prokaryotic viral proteins. Nature Microbiology |
| Fels JM, Khan S, Forster R, et al. (2022) Genomic surveillance of SARS-CoV-2 during the first year of the pandemic in the Bronx enabled clinical and epidemiological inference. Cold Spring Harbor Molecular Case Studies |
| Fels JM, Khan S, Forster R, et al. (2021) Genomic surveillance of SARS-CoV-2 in the Bronx enables clinical and epidemiological inference. Medrxiv : the Preprint Server For Health Sciences |
| Berube PM, Biller SJ, Hackl T, et al. (2018) Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific Data. 5: 180154 |
| Kauffman KM, Brown JM, Sharma RS, et al. (2018) Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses. Scientific Data. 5: 180114 |
| Kauffman KM, Hussain FA, Yang J, et al. (2018) A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria. Nature |
| Biller SJ, Berube PM, Berta-Thompson JW, et al. (2014) Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data. 1: 140034 |
| Kelly L, Ding H, Huang KH, et al. (2013) Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. The Isme Journal. 7: 1827-41 |
| Labrie SJ, Frois-Moniz K, Osburne MS, et al. (2013) Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environmental Microbiology. 15: 1356-76 |
| Malmstrom RR, Rodrigue S, Huang KH, et al. (2013) Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98 |