Anna Panchenko
Affiliations: | Queen's University at Kingston, Kingston, Ontario, Canada |
Area:
computational biophysics, bioinformaticsGoogle:
"Anna Panchenko"Parents
Sign in to add mentor| Konstantin Shaitan | grad student | 1989-1993 | Moscow State University |
| Peter G. Wolynes | post-doc | 1994-1997 | UIUC |
Children
Sign in to add trainee| Daria Ostroverkhova | grad student | 2020- | Queen's University at Kingston |
| Daniel Espiritu | grad student | 2021- | Queen's University at Kingston |
| Alexey Shaytan | grad student | 2013-2017 | Moscow State University |
| Yosef Masoudi-Sobhanzadeh | post-doc | Queen's University at Kingston | |
| Tiejun Wei | post-doc | Queen's University at Kingston | |
| Manoj Tyagi | post-doc | 2006-2010 | NIH (NCI) |
| Kosuke Hashimoto | post-doc | 2009-2011 | RIKEN |
| Hafumi Nishi | post-doc | 2010-2012 | Tohoku University (Japan) |
| Minghui Li | post-doc | 2012-2016 | Soochow University |
| Alexander Goncearenco | post-doc | 2013-2019 | VantAI |
| Seyit Kale | post-doc | 2018-2019 | (Chemistry Tree) |
| Yunhui Peng | post-doc | 2019-2022 | NIH (NLM) |
| Shuxiang Li | research scientist | 2019- | Queen's University at Kingston |
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Publications
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| Masoudi-Sobhanzadeh Y, Li S, Peng Y, et al. (2024) Interpretable deep residual network uncovers nucleosome positioning and associated features. Nucleic Acids Research |
| Ostroverkhova D, Sheng Y, Panchenko A. (2024) Are Next-Generation Pathogenicity Predictors Applicable to Cancer? Journal of Molecular Biology. 436: 168644 |
| Peng Y, Song W, Teif VB, et al. (2024) Detection of new pioneer transcription factors as cell-type-specific nucleosome binders. Elife. 12 |
| Ostroverkhova D, Tyryshkin K, Beach AK, et al. (2024) DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors. Cell Reports. 43: 113655 |
| Jensen M, Chandrasekaran V, García-Bonete MJ, et al. (2023) Survivin prevents the polycomb repressor complex 2 from methylating histone 3 lysine 27. Iscience. 26: 106976 |
| Ostroverkhova D, Espiritu D, Aristizabal MJ, et al. (2023) Leveraging Gene Redundancy to Find New Histone Drivers in Cancer. Cancers. 15 |
| Peng Y, Song W, Teif VB, et al. (2023) Detection of new pioneer transcription factors as cell-type specific nucleosome binders. Biorxiv : the Preprint Server For Biology |
| Ostroverkhova D, Przytycka TM, Panchenko AR. (2023) Cancer driver mutations: predictions and reality. Trends in Molecular Medicine |
| Li S, Wei T, Panchenko AR. (2023) Histone variant H2A.Z modulates nucleosome dynamics to promote DNA accessibility. Nature Communications. 14: 769 |
| Seal RL, Denny P, Bruford EA, et al. (2022) A standardized nomenclature for mammalian histone genes. Epigenetics & Chromatin. 15: 34 |