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| Lamoureux CR, Decker KT, Sastry AV, et al. (2023) A multi-scale expression and regulation knowledge base for Escherichia coli. Nucleic Acids Research |
| Gao Y, Poudel S, Seif Y, et al. (2023) Elucidating the CodY regulon in USA300 substrains TCH1516 and LAC. Msystems. e0027923 |
| Rodionova IA, Lim HG, Rodionov DA, et al. (2023) CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in . Biorxiv : the Preprint Server For Biology |
| Gao Y, Bang I, Seif Y, et al. (2023) The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets. Nucleic Acids Research |
| Bang I, Lee SM, Park S, et al. (2023) Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling. Briefings in Bioinformatics |
| Poudel S, Hefner Y, Szubin R, et al. (2022) Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains. Msystems. e0048022 |
| Rodionova IA, Gao Y, Monk J, et al. (2022) A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli. Scientific Reports. 12: 7274 |
| Decker KT, Gao Y, Rychel K, et al. (2021) proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms. Nucleic Acids Research |
| Gao Y, Lim HG, Verkler H, et al. (2021) Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo. Nucleic Acids Research |
| Rodionova IA, Gao Y, Sastry A, et al. (2021) Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli. Communications Biology. 4: 991 |