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| Fang X, Vázquez-Baeza Y, Elijah E, et al. (2020) Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity. Inflammatory Bowel Diseases |
| Shiratsubaki IS, Fang X, Souza ROO, et al. (2020) Genome-scale metabolic models highlight stage-specific differences in essential metabolic pathways in Trypanosoma cruzi. Plos Neglected Tropical Diseases. 14: e0008728 |
| Fang X, Lloyd CJ, Palsson BO. (2020) Reconstructing organisms in silico: genome-scale models and their emerging applications. Nature Reviews. Microbiology |
| Mih N, Monk JM, Fang X, et al. (2020) Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. Bmc Bioinformatics. 21: 162 |
| Jensen CS, Norsigian CJ, Fang X, et al. (2020) Reconstruction and Validation of a Genome-Scale Metabolic Model of (iCJ415), a Human Commensal and Opportunistic Pathogen. Frontiers in Genetics. 11: 116 |
| Norsigian CJ, Fang X, Seif Y, et al. (2019) A workflow for generating multi-strain genome-scale metabolic models of prokaryotes. Nature Protocols |
| Du B, Yang L, Lloyd CJ, et al. (2019) Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli. Plos Computational Biology. 15: e1007525 |
| Du B, Olson CA, Sastry AV, et al. (2019) Adaptive laboratory evolution of under acid stress. Microbiology (Reading, England) |
| Wu X, Yang M, Fang X, et al. (2018) Expression and regulation of phenol-soluble modulins and enterotoxins in foodborne Staphylococcus aureus. Amb Express. 8: 187 |
| Fang X, Monk JM, Nurk S, et al. (2018) Metagenomics-Based, Strain-Level Analysis of From a Time-Series of Microbiome Samples From a Crohn's Disease Patient. Frontiers in Microbiology. 9: 2559 |