Benedict Paten, PhD

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
 European Bioinformatics Institute University of Cambridge, Cambridge, England, United Kingdom 
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"Benedict Paten"

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Ewan Birney grad student 2006 Cambridge
 (Large-scale multiple alignment and transcriptionally-associated pattern discovery in vertebrate genomes)
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Publications

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Gordon D, Huddleston J, Chaisson MJ, et al. (2016) Long-read sequence assembly of the gorilla genome. Science (New York, N.Y.). 352: aae0344
Ip CL, Loose M, Tyson JR, et al. (2015) MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000research. 4: 1075
Speir ML, Zweig AS, Rosenbloom KR, et al. (2015) The UCSC Genome Browser database: 2016 update. Nucleic Acids Research
Philippakis AA, Azzariti DR, Beltran S, et al. (2015) The Matchmaker Exchange: A Platform for Rare Disease Gene Discovery. Human Mutation. 36: 915-21
Novak AM, Rosen Y, Haussler D, et al. (2015) Canonical, stable, general mapping using context schemes. Bioinformatics (Oxford, England). 31: 3569-76
Paten B, Diekhans M, Druker BJ, et al. (2015) The NIH BD2K center for big data in translational genomics. Journal of the American Medical Informatics Association : Jamia
Koepfli KP, Paten B, et al. (2015) The Genome 10K Project: a way forward. Annual Review of Animal Biosciences. 3: 57-111
Jain M, Fiddes IT, Miga KH, et al. (2015) Improved data analysis for the MinION nanopore sequencer. Nature Methods. 12: 351-6
Rosenbloom KR, Armstrong J, Barber GP, et al. (2015) The UCSC Genome Browser database: 2015 update. Nucleic Acids Research. 43: D670-81
Nguyen N, Hickey G, Zerbino DR, et al. (2015) Building a pan-genome reference for a population Journal of Computational Biology. 22: 387-401
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