| Year |
Citation |
Score |
| 2020 |
Wan YW, Al-Ouran R, Mangleburg CG, Perumal TM, Lee TV, Allison K, Swarup V, Funk CC, Gaiteri C, Allen M, Wang M, Neuner SM, Kaczorowski CC, Philip VM, Howell GR, ... ... Eddy JA, et al. Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models. Cell Reports. 32: 107908. PMID 32668255 DOI: 10.1016/J.Celrep.2020.107908 |
0.559 |
|
| 2020 |
Eddy JA, Thorsson V, Lamb AE, Gibbs DL, Heimann C, Yu JX, Chung V, Chae Y, Dang K, Vincent BG, Shmulevich I, Guinney J. CRI iAtlas: an interactive portal for immuno-oncology research F1000research. 9: 1028. DOI: 10.12688/F1000Research.25141.1 |
0.33 |
|
| 2019 |
Thorsson V, Eddy JA, Lamb A, Gibbs DL, Shmulevich I, Guinney J. Abstract B051: Facilitating translational research with interactive tools for immuno-oncology data Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-B051 |
0.35 |
|
| 2019 |
Nikolov M, White B, Pegoraro A, Hope D, Eljanne M, Eddy J, Janmey P, Mallick P, Dang K. Abstract 2451: Physical, genomic, and proteomic characterization of a cancer cell line panel in an integrated dataset Cancer Research. 79: 2451-2451. DOI: 10.1158/1538-7445.Am2019-2451 |
0.348 |
|
| 2018 |
Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, et al. The Immune Landscape of Cancer. Immunity. PMID 29628290 DOI: 10.1016/J.Immuni.2018.03.023 |
0.348 |
|
| 2017 |
Samal A, Craig JP, Coradetti ST, Benz JP, Eddy JA, Price ND, Glass NL. Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa. Biotechnology For Biofuels. 10: 225. PMID 28947916 DOI: 10.1186/S13068-017-0901-2 |
0.476 |
|
| 2016 |
Allen M, Carrasquillo MM, Funk C, Heavner BD, Zou F, Younkin CS, Burgess JD, Chai HS, Crook J, Eddy JA, Li H, Logsdon B, Peters MA, Dang KK, Wang X, et al. Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases. Scientific Data. 3: 160089. PMID 27727239 DOI: 10.1038/Sdata.2016.89 |
0.578 |
|
| 2016 |
Golde TE, Ertekin-Taner N, Chakrabarty P, Allen M, Carrasquillo MM, Dickson DW, Younkin SG, Levites Y, Price ND, Funk C, Heavner BD, Logsdon B, Mangravite LM, Li H, Burgess JD, ... ... Eddy J, et al. F2-01-04: From Systems Level Transcriptomics to new Immune Targets for Alzheimer’s Disease Alzheimer's & Dementia. 12: P215-P216. DOI: 10.1016/J.Jalz.2016.06.383 |
0.478 |
|
| 2015 |
Eddy JA, Funk CC, Price ND. Fostering synergy between cell biology and systems biology. Trends in Cell Biology. PMID 26013981 DOI: 10.1016/J.Tcb.2015.04.005 |
0.51 |
|
| 2015 |
Chakrabarty P, Li A, Ceballos-Diaz C, Eddy JA, Funk CC, Moore B, DiNunno N, Rosario AM, Cruz PE, Verbeeck C, Sacino A, Nix S, Janus C, Price ND, Das P, et al. IL-10 alters immunoproteostasis in APP mice, increasing plaque burden and worsening cognitive behavior. Neuron. 85: 519-33. PMID 25619653 DOI: 10.1016/J.Neuron.2014.11.020 |
0.492 |
|
| 2013 |
Wang C, Funk CC, Eddy JA, Price ND. Transcriptional analysis of aggressiveness and heterogeneity across grades of astrocytomas. Plos One. 8: e76694. PMID 24146911 DOI: 10.1371/Journal.Pone.0076694 |
0.705 |
|
| 2013 |
Earls JC, Eddy JA, Funk CC, Ko Y, Magis AT, Price ND. AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. Bmc Bioinformatics. 14: 78. PMID 23496976 DOI: 10.1186/1471-2105-14-78 |
0.711 |
|
| 2013 |
Ko Y, Ament SA, Eddy JA, Caballero J, Earls JC, Hood L, Price ND. Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 110: 3095-100. PMID 23386717 DOI: 10.1073/Pnas.1222897110 |
0.712 |
|
| 2012 |
Wang Y, Eddy JA, Price ND. Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. Bmc Systems Biology. 6: 153. PMID 23234303 DOI: 10.1186/1752-0509-6-153 |
0.626 |
|
| 2012 |
Sangar V, Eddy JA, Simeonidis E, Price ND. Mechanistic modeling of aberrant energy metabolism in human disease. Frontiers in Physiology. 3: 404. PMID 23112774 DOI: 10.3389/Fphys.2012.00404 |
0.542 |
|
| 2012 |
Yang JL, Cogdell D, Eddy J, Trent J, Price N, Zhang W. [Expression of PRUNE2 mRNA and its positive correlation with non-coding RNA PCA3 in leiomyosarcoma]. Zhonghua Zhong Liu Za Zhi [Chinese Journal of Oncology]. 34: 497-500. PMID 22967466 DOI: 10.3760/Cma.J.Issn.0253-3766.2012.07.005 |
0.5 |
|
| 2011 |
Chandrasekaran S, Ament SA, Eddy JA, Rodriguez-Zas SL, Schatz BR, Price ND, Robinson GE. Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states. Proceedings of the National Academy of Sciences of the United States of America. 108: 18020-5. PMID 21960440 DOI: 10.1073/Pnas.1114093108 |
0.704 |
|
| 2011 |
Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND. Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. Bmc Systems Biology. 5: 130. PMID 21846360 DOI: 10.1186/1752-0509-5-130 |
0.528 |
|
| 2011 |
Magis AT, Earls JC, Ko YH, Eddy JA, Price ND. Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. Bioinformatics (Oxford, England). 27: 872-3. PMID 21257608 DOI: 10.1093/Bioinformatics/Btr033 |
0.696 |
|
| 2010 |
Edelman LB, Eddy JA, Price ND. In silico models of cancer. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 438-59. PMID 20836040 DOI: 10.1002/Wsbm.75 |
0.562 |
|
| 2010 |
Yang J, Eddy JA, Pan Y, Hategan A, Tabus I, Wang Y, Cogdell D, Price ND, Pollock RE, Lazar AJ, Hunt KK, Trent JC, Zhang W. Integrated proteomics and genomics analysis reveals a novel mesenchymal to epithelial reverting transition in leiomyosarcoma through regulation of slug. Molecular & Cellular Proteomics : McP. 9: 2405-13. PMID 20651304 DOI: 10.1074/Mcp.M110.000240 |
0.552 |
|
| 2010 |
Eddy JA, Hood L, Price ND, Geman D. Identifying tightly regulated and variably expressed networks by Differential Rank Conservation (DIRAC). Plos Computational Biology. 6: e1000792. PMID 20523739 DOI: 10.1371/Journal.Pcbi.1000792 |
0.569 |
|
| 2010 |
Eddy JA, Sung J, Geman D, Price ND. Relative expression analysis for molecular cancer diagnosis and prognosis. Technology in Cancer Research & Treatment. 9: 149-59. PMID 20218737 DOI: 10.1177/153303461000900204 |
0.659 |
|
| 2009 |
Eddy JA, Geman D, Price ND. Relative expression analysis for identifying perturbed pathways. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 5456-9. PMID 19964680 DOI: 10.1109/IEMBS.2009.5334063 |
0.552 |
|
| 2009 |
Milne CB, Kim PJ, Eddy JA, Price ND. Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology. Biotechnology Journal. 4: 1653-70. PMID 19946878 DOI: 10.1002/Biot.200900234 |
0.507 |
|
| 2008 |
Lee JM, Min Lee J, Gianchandani EP, Eddy JA, Papin JA. Dynamic analysis of integrated signaling, metabolic, and regulatory networks. Plos Computational Biology. 4: e1000086. PMID 18483615 DOI: 10.1371/Journal.Pcbi.1000086 |
0.348 |
|
| 2008 |
Chavali AK, Whittemore JD, Eddy JA, Williams KT, Papin JA. Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major. Molecular Systems Biology. 4: 177. PMID 18364711 DOI: 10.1038/Msb.2008.15 |
0.361 |
|
| 2008 |
Lee JM, Gianchandani EP, Eddy JA, Papin JA. Application of a novel optimization-based approach to characterize integrated signalling, regulatory, and metabolic biochemical networks Ifac Proceedings Volumes. 41: 11630-11635. DOI: 10.3182/20080706-5-Kr-1001.01971 |
0.303 |
|
| 2008 |
Eddy JA, Geman D, Price ND. Pathway expression rank analysis (p-xray): A novel tool for gene set expression analysis Aiche Annual Meeting, Conference Proceedings. |
0.522 |
|
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