| Year |
Citation |
Score |
| 2020 |
Mellinger AL, Griffith EH, Bereman MS. Peptide variability and signatures associated with disease progression in CSF collected longitudinally from ALS patients. Analytical and Bioanalytical Chemistry. PMID 32591871 DOI: 10.1007/S00216-020-02765-8 |
0.37 |
|
| 2020 |
Bereman MS, Kirkwood KI, Sabaretnam T, Furlong S, Rowe DB, Guillemin GJ, Mellinger AL, Muddiman DC. Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β-Methyl Amino-l-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis. Journal of Proteome Research. PMID 32418425 DOI: 10.1021/Acs.Jproteome.0C00216 |
0.499 |
|
| 2018 |
Bereman MS, Beri J, Enders JR, Nash T. Machine Learning Reveals Protein Signatures in CSF and Plasma Fluids of Clinical Value for ALS. Scientific Reports. 8: 16334. PMID 30397248 DOI: 10.1038/S41598-018-34642-X |
0.347 |
|
| 2018 |
Beri J, Kirkwood KI, Muddiman DC, Bereman MS. A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-L-alanine in environmental samples. Analytical and Bioanalytical Chemistry. PMID 29455280 DOI: 10.1007/S00216-018-0930-0 |
0.57 |
|
| 2018 |
Beck K, Camp N, Bereman M, Bollinger J, Egertson J, MacCoss M, Wolf-Yadlin A. Development of Selected Reaction Monitoring Methods to Systematically Quantify Kinase Abundance and Phosphorylation Stoichiometry in Human Samples. Methods in Molecular Biology (Clifton, N.J.). 1636: 353-369. PMID 28730491 DOI: 10.1007/978-1-4939-7154-1_23 |
0.724 |
|
| 2017 |
Beri J, Nash T, Martin RM, Bereman MS. Exposure to BMAA mirrors molecular processes linked to neurodegenerative disease. Proteomics. PMID 28837265 DOI: 10.1002/Pmic.201700161 |
0.309 |
|
| 2017 |
DeBlasio SL, Bereman MS, Mahoney J, Thannhauser TW, Gray SM, MacCoss MJ, Cilia Heck M. Evaluation of a Bead-Free Coimmunoprecipitation Technique for Identification of Virus-Host Protein Interactions Using High-Resolution Mass Spectrometry. Journal of Biomolecular Techniques : Jbt. PMID 28785175 DOI: 10.7171/jbt.17-2803-002 |
0.51 |
|
| 2017 |
Dogu E, Mohammad-Taheri S, Abbatiello SE, Bereman MS, MacLean B, Schilling B, Vitek O. MSstatsQC: Longitudinal system suitability monitoring and quality control for targeted proteomic experiments. Molecular & Cellular Proteomics : McP. PMID 28483925 DOI: 10.1074/Mcp.M116.064774 |
0.4 |
|
| 2016 |
Bereman MS, Beri J, Sharma V, Nathe C, Eckels J, MacLean B, MacCoss MJ. An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments. Journal of Proteome Research. PMID 27700092 DOI: 10.1021/Acs.Jproteome.6B00744 |
0.618 |
|
| 2016 |
Murray I, Walker G, Bereman MS. Improving the analytical performance and versatility of paper spray mass spectrometry via paper microfluidics. The Analyst. PMID 27138343 DOI: 10.1039/C6An00649C |
0.326 |
|
| 2015 |
Beri JJ, Rosenblatt MM, Strauss E, Urh M, Bereman MS. A Novel Reagent for Evaluating LC MS/MS Performance in Bottom-up Proteomic Experiments. Analytical Chemistry. PMID 26537636 DOI: 10.1021/Acs.Analchem.5B04121 |
0.478 |
|
| 2015 |
Porter CJ, Bereman MS. Data-independent-acquisition mass spectrometry for identification of targeted-peptide site-specific modifications. Analytical and Bioanalytical Chemistry. PMID 26105512 DOI: 10.1007/S00216-015-8819-7 |
0.477 |
|
| 2015 |
Hilton GM, Taylor AJ, McClure CD, Parsons GN, Bonner JC, Bereman MS. Toxicoproteomic analysis of pulmonary carbon nanotube exposure using LC-MS/MS. Toxicology. 329: 80-7. PMID 25598225 DOI: 10.1016/J.Tox.2015.01.011 |
0.422 |
|
| 2015 |
Bereman MS. Tools for monitoring system suitability in LC MS/MS centric proteomic experiments. Proteomics. 15: 891-902. PMID 25327420 DOI: 10.1002/Pmic.201400373 |
0.493 |
|
| 2014 |
Hall JR, Bereman MS, Nepomuceno AI, Thompson EA, Muddiman DC, Smart RC. C/EBPα regulates CRL4(Cdt2)-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint. Cell Cycle (Georgetown, Tex.). 13: 3602-10. PMID 25483090 DOI: 10.4161/15384101.2014.962957 |
0.463 |
|
| 2014 |
Pinheiro P, Bereman MS, Burd J, Pals M, Armstrong S, Howe KJ, Thannhauser TW, MacCoss MJ, Gray SM, Cilia M. Evidence of the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae). Journal of Proteome Research. 13: 2094-108. PMID 24588548 DOI: 10.1021/Pr4012415 |
0.514 |
|
| 2014 |
Bereman MS, Johnson R, Bollinger J, Boss Y, Shulman N, MacLean B, Hoofnagle AN, MacCoss MJ. Implementation of statistical process control for proteomic experiments via LC MS/MS. Journal of the American Society For Mass Spectrometry. 25: 581-7. PMID 24496601 DOI: 10.1007/S13361-013-0824-5 |
0.733 |
|
| 2013 |
Tamborindeguy C, Bereman MS, DeBlasio S, Igwe D, Smith DM, White F, MacCoss MJ, Gray SM, Cilia M. Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus. Plos One. 8: e71620. PMID 23951206 DOI: 10.1371/Journal.Pone.0071620 |
0.535 |
|
| 2013 |
Bereman MS, Hsieh EJ, Corso TN, Van Pelt CK, MacCoss MJ. Development and characterization of a novel plug and play liquid chromatography-mass spectrometry (LC-MS) source that automates connections between the capillary trap, column, and emitter Molecular and Cellular Proteomics. 12: 1701-1708. PMID 23422586 DOI: 10.1074/Mcp.O112.024893 |
0.774 |
|
| 2013 |
Hsieh EJ, Bereman MS, Durand S, Valaskovic GA, MacCoss MJ. Effects of column and gradient lengths on peak capacity and peptide identification in nanoflow LC-MS/MS of complex proteomic samples. Journal of the American Society For Mass Spectrometry. 24: 148-53. PMID 23197307 DOI: 10.1007/S13361-012-0508-6 |
0.779 |
|
| 2012 |
McIlwain S, Mathews M, Bereman MS, Rubel EW, MacCoss MJ, Noble WS. Estimating relative abundances of proteins from shotgun proteomics data. Bmc Bioinformatics. 13: 308. PMID 23164367 DOI: 10.1186/1471-2105-13-308 |
0.601 |
|
| 2012 |
Cilia M, Peter KA, Bereman MS, Howe K, Fish T, Smith D, Gildow F, MacCoss MJ, Thannhauser TW, Gray SM. Discovery and Targeted LC-MS/MS of Purified Polerovirus Reveals Differences in the Virus-Host Interactome Associated with Altered Aphid Transmission Plos One. 7. PMID 23118947 DOI: 10.1371/Journal.Pone.0048177 |
0.536 |
|
| 2012 |
Egertson JD, Eng JK, Bereman MS, Hsieh EJ, Merrihew GE, MacCoss MJ. De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics Journal of the American Society For Mass Spectrometry. 23: 2075-2082. PMID 23007965 DOI: 10.1007/S13361-012-0482-Z |
0.726 |
|
| 2012 |
Spivak M, Bereman MS, Maccoss MJ, Noble WS. Learning score function parameters for improved spectrum identification in tandem mass spectrometry experiments. Journal of Proteome Research. 11: 4499-508. PMID 22866926 DOI: 10.1021/Pr300234M |
0.608 |
|
| 2012 |
Bereman MS, Maclean B, Tomazela DM, Liebler DC, Maccoss MJ. The development of selected reaction monitoring methods for targeted proteomics via empirical refinement Proteomics. 12: 1134-1141. PMID 22577014 DOI: 10.1002/Pmic.201200042 |
0.747 |
|
| 2012 |
Bereman MS, Tomazela DM, Heins HS, Simonato M, Cogo PE, Hamvas A, Patterson BW, Cole FS, MacCoss MJ. A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome Analytical and Bioanalytical Chemistry. 403: 2397-2402. PMID 22526637 DOI: 10.1007/S00216-012-5953-3 |
0.714 |
|
| 2012 |
Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson BW. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Molecular & Cellular Proteomics : McP. 11: 202-14. PMID 22454539 DOI: 10.1074/Mcp.M112.017707 |
0.631 |
|
| 2012 |
Bereman MS, Canterbury JD, Egertson JD, Horner J, Remes PM, Schwartz J, Zabrouskov V, MacCoss MJ. Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics Analytical Chemistry. 84: 1533-1539. PMID 22192247 DOI: 10.1021/Ac203210A |
0.774 |
|
| 2012 |
Cilia M, Bereman M, Fish T, MacCoss MJ, Gray S. Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci Journal of Integrative Agriculture. 11: 249-262. DOI: 10.1016/S2095-3119(12)60009-4 |
0.541 |
|
| 2011 |
Pierce SB, Spurrell CH, Mandell JB, Lee MK, Zeligson S, Bereman MS, Stray SM, Fokstuen S, MacCoss MJ, Levy-Lahad E, King MC, Motulsky AG. Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria. Proceedings of the National Academy of Sciences of the United States of America. 108: 18313-7. PMID 22042873 DOI: 10.1073/Pnas.1115888108 |
0.484 |
|
| 2011 |
Bereman MS, Muddiman DC. N-linked global glycan profiling by nanoLC mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 790: 87-97. PMID 21948408 DOI: 10.1007/978-1-61779-319-6_7 |
0.578 |
|
| 2011 |
Dixon RB, Bereman MS, Petitte JN, Hawkridge AM, Muddiman DC. One-Year Plasma N-linked Glycome Intra-individual and Inter-individual Variability in the Chicken Model of Spontaneous Ovarian Adenocarcinoma. International Journal of Mass Spectrometry. 305: 79-86. PMID 21845070 DOI: 10.1016/J.Ijms.2010.05.023 |
0.51 |
|
| 2011 |
Bereman MS, Egertson JD, Maccoss MJ. Comparison between procedures using SDS for shotgun proteomic analyses of complex samples Proteomics. 11: 2931-2935. PMID 21656683 DOI: 10.1002/Pmic.201100045 |
0.765 |
|
| 2010 |
Bereman MS, Muddiman DC. The effects of abundant plasma protein depletion on global glycan profiling using nanoLC FT-ICR mass spectrometry. Analytical and Bioanalytical Chemistry. 396: 1473-9. PMID 20087731 DOI: 10.1007/S00216-009-3368-6 |
0.55 |
|
| 2010 |
Bereman MS, Comins DL, Muddiman DC. Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides. Chemical Communications (Cambridge, England). 46: 237-9. PMID 20024337 DOI: 10.1039/B915589A |
0.484 |
|
| 2009 |
Bereman MS, Young DD, Deiters A, Muddiman DC. Development of a robust and high throughput method for profiling N-linked glycans derived from plasma glycoproteins by NanoLC-FTICR mass spectrometry. Journal of Proteome Research. 8: 3764-70. PMID 19435342 DOI: 10.1021/Pr9002323 |
0.591 |
|
| 2009 |
Bereman MS, Williams TI, Muddiman DC. Development of a nanoLC LTQ orbitrap mass spectrometric method for profiling glycans derived from plasma from healthy, benign tumor control, and epithelial ovarian cancer patients. Analytical Chemistry. 81: 1130-6. PMID 19113831 DOI: 10.1021/Ac802262W |
0.539 |
|
| 2008 |
Bereman MS, Lyndon MM, Dixon RB, Muddiman DC. Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer. Rapid Communications in Mass Spectrometry : Rcm. 22: 1563-6. PMID 18421754 DOI: 10.1002/Rcm.3544 |
0.565 |
|
| 2007 |
Bereman MS, Williams TI, Muddiman DC. Carbohydrate analysis by desorption electrospray ionization fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 79: 8812-5. PMID 17918969 DOI: 10.1021/Ac0713858 |
0.587 |
|
| 2007 |
Dixon RB, Bereman MS, Muddiman DC, Hawkridge AM. Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector. Journal of the American Society For Mass Spectrometry. 18: 1844-7. PMID 17716909 DOI: 10.1016/J.Jasms.2007.07.024 |
0.559 |
|
| 2007 |
Bereman MS, Muddiman DC. Detection of attomole amounts of analyte by desorption electrospray ionization mass spectrometry (DESI-MS) determined using fluorescence spectroscopy. Journal of the American Society For Mass Spectrometry. 18: 1093-6. PMID 17448675 DOI: 10.1016/J.Jasms.2007.03.006 |
0.567 |
|
| 2006 |
Bereman MS, Nyadong L, Fernandez FM, Muddiman DC. Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 20: 3409-11. PMID 17051610 DOI: 10.1002/Rcm.2759 |
0.624 |
|
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