Ronald Jansen, Ph.D. - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2007 Yu H, Jansen R, Stolovitzky G, Gerstein M. Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinformatics (Oxford, England). 23: 2163-73. PMID 17540677 DOI: 10.1093/bioinformatics/btm291  0.6
2006 Vilar JM, Jansen R, Sander C. Signal processing in the TGF-beta superfamily ligand-receptor network. Plos Computational Biology. 2: e3. PMID 16446785 DOI: 10.1371/journal.pcbi.0020003  0.6
2004 Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Drug Discovery Today. 9: S32-40. PMID 23573642  0.6
2004 Lin N, Wu B, Jansen R, Gerstein M, Zhao H. Information assessment on predicting protein-protein interactions. Bmc Bioinformatics. 5: 154. PMID 15491499 DOI: 10.1186/1471-2105-5-154  0.6
2004 Jansen R, Gerstein M. Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Current Opinion in Microbiology. 7: 535-45. PMID 15451510 DOI: 10.1016/j.mib.2004.08.012  0.6
2004 Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M. Analyzing cellular biochemistry in terms of molecular networks. Annual Review of Biochemistry. 73: 1051-87. PMID 15189167 DOI: 10.1146/annurev.biochem.73.011303.073950  0.6
2003 Krebs WG, Tsai J, Alexandrov V, Junker J, Jansen R, Gerstein M. Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences. Methods in Enzymology. 374: 544-84. PMID 14696388 DOI: 10.1016/S0076-6879(03)74023-3  0.6
2003 Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science (New York, N.Y.). 302: 449-53. PMID 14564010 DOI: 10.1126/science.1087361  0.6
2003 Jansen R, Bussemaker HJ, Gerstein M. Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Research. 31: 2242-51. PMID 12682375 DOI: 10.1093/nar/gkg306  0.6
2002 Jansen R, Lan N, Qian J, Gerstein M. Integration of genomic datasets to predict protein complexes in yeast. Journal of Structural and Functional Genomics. 2: 71-81. PMID 12836664 DOI: 10.1023/A:1020495201615  0.6
2002 Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G. Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons. Genome Research. 12: 1703-15. PMID 12421757 DOI: 10.1101/gr.192502  0.6
2002 Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M. Bridging structural biology and genomics: assessing protein interaction data with known complexes. Trends in Genetics : Tig. 18: 529-36. PMID 12350343 DOI: 10.1016/S0168-9525(02)02763-4  0.6
2002 Greenbaum D, Jansen R, Gerstein M. Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts. Bioinformatics (Oxford, England). 18: 585-96. PMID 12016056  0.6
2002 Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder GS, Snyder M. Subcellular localization of the yeast proteome. Genes & Development. 16: 707-19. PMID 11914276 DOI: 10.1101/gad.970902  0.6
2002 Gerstein M, Lan N, Jansen R. Proteomics. Integrating interactomes. Science (New York, N.Y.). 295: 284-7. PMID 11786630 DOI: 10.1126/science.1068664  0.6
2002 Jansen R, Greenbaum D, Gerstein M. Relating whole-genome expression data with protein-protein interactions. Genome Research. 12: 37-46. PMID 11779829 DOI: 10.1101/gr.205602  0.6
2002 Lan N, Jansen R, Gerstein M. Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions Proceedings of the Ieee. 90: 1848-1858. DOI: 10.1109/JPROC.2002.805302  0.6
2001 Greenbaum D, Luscombe NM, Jansen R, Qian J, Gerstein M. Interrelating different types of genomic data, from proteome to secretome: 'oming in on function. Genome Research. 11: 1463-8. PMID 11544189 DOI: 10.1101/gr.207401  0.6
2001 Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M. Global analysis of protein activities using proteome chips. Science (New York, N.Y.). 293: 2101-5. PMID 11474067 DOI: 10.1126/science.1062191  0.6
2001 Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M. PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Nucleic Acids Research. 29: 1750-64. PMID 11292848  0.6
2000 Drawid A, Jansen R, Gerstein M. Genome-wide analysis relating expression level with protein subcellular localization Trends in Genetics. 16: 426-430. PMID 11050323 DOI: 10.1016/S0168-9525(00)02108-9  0.6
2000 Gerstein M, Jansen R. The current excitement in bioinformatics - Analysis of whole-genome expression data: How does it relate to protein structure and function? Current Opinion in Structural Biology. 10: 574-584. PMID 11042457 DOI: 10.1016/S0959-440X(00)00134-2  0.6
2000 Jansen R, Gerstein M. Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins Nucleic Acids Research. 28: 1481-1488. PMID 10684945  0.6
1999 Ross-Macdonald P, Coelho PS, Roemer T, Agarwal S, Kumar A, Jansen R, Cheung KH, Sheehan A, Symoniatis D, Umansky L, Heidtman M, Nelson FK, Iwasaki H, Hager K, Gerstein M, et al. Large-scale analysis of the yeast genome by transposon tagging and gene disruption. Nature. 402: 413-8. PMID 10586881 DOI: 10.1038/46558  0.6
1996 Jansen RW, Van De Maas L, Vermes I. The meaning of eosinophilic cationic protein (ECP) determinations in patients with allergic asthma | De betekenis van het eosinophilic cationic protein (ECP) bij patienten met allergische asthma Nederlands Tijdschrift Voor De Klinische Chemie. 21: 211-213.  0.6
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