Samuel C. Flores, Ph.D. - Related publications

Yale University, New Haven, CT 
Computational Biology and Bioinformatics
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24 most relevant papers in past 60 days:
Year Citation  Score
2022 Kamenik AS, Linker SM, Riniker S. Enhanced sampling without borders: on global biasing functions and how to reweight them. Physical Chemistry Chemical Physics : Pccp. 24: 1225-1236. PMID 34935813 DOI: 10.1039/d1cp04809k   
2022 Zou Y, Lu X, Yang J, Wang T, He X. Structural Damage Identification Based on Transmissibility in Time Domain. Sensors (Basel, Switzerland). 22. PMID 35009942 DOI: 10.3390/s22010393   
2022 Labiak R, Lavor C, Souza M. Distance geometry and protein loop modeling. Journal of Computational Chemistry. 43: 349-358. PMID 34904248 DOI: 10.1002/jcc.26796   
2022 Brookes DH, Aghazadeh A, Listgarten J. On the sparsity of fitness functions and implications for learning. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34937698 DOI: 10.1073/pnas.2109649118   
2022 Saini V, Sharma A, Nivatia D. A machine learning approach for predicting the nucleophilicity of organic molecules. Physical Chemistry Chemical Physics : Pccp. PMID 34986215 DOI: 10.1039/d1cp05072a   
2022 Jiang D, Sun H, Wang J, Hsieh CY, Li Y, Wu Z, Cao D, Wu J, Hou T. Out-of-the-box deep learning prediction of quantum-mechanical partial charges by graph representation and transfer learning. Briefings in Bioinformatics. PMID 35062020 DOI: 10.1093/bib/bbab597   
2022 Vishwanath B, Nanjundaswamy T, Rose K. Effective Prediction Modes Design for Adaptive Compression With Application in Video Coding. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 31: 636-647. PMID 34914587 DOI: 10.1109/TIP.2021.3134454   
2022 Wang R, Fang F, Cui J, Zheng W. Learning self-driven collective dynamics with graph networks. Scientific Reports. 12: 500. PMID 35017588 DOI: 10.1038/s41598-021-04456-5   
2022 Nearing JT, Douglas GM, Hayes MG, MacDonald J, Desai DK, Allward N, Jones CMA, Wright RJ, Dhanani AS, Comeau AM, Langille MGI. Microbiome differential abundance methods produce different results across 38 datasets. Nature Communications. 13: 342. PMID 35039521 DOI: 10.1038/s41467-022-28034-z   
2022 Tavakoli M, Mood A, Van Vranken D, Baldi P. Quantum Mechanics and Machine Learning Synergies: Graph Attention Neural Networks to Predict Chemical Reactivity. Journal of Chemical Information and Modeling. PMID 35020394 DOI: 10.1021/acs.jcim.1c01400   
2022 Russo JD, Zhang S, Leung JMG, Bogetti AT, Thompson JP, DeGrave AJ, Torrillo PA, Pratt AJ, Wong KF, Xia J, Copperman J, Adelman JL, Zwier MC, LeBard DN, Zuckerman DM, et al. WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications. Journal of Chemical Theory and Computation. PMID 35043623 DOI: 10.1021/acs.jctc.1c01154   
2022 Tang C, Tong A, Zheng A, Peng H, Li W. Using a Selective Ensemble Support Vector Machine to Fuse Multimodal Features for Human Action Recognition. Computational Intelligence and Neuroscience. 2022: 1877464. PMID 35047028 DOI: 10.1155/2022/1877464   
2022 Zheng W, Hu J. Multivariate Time Series Prediction Based on Temporal Change Information Learning Method. Ieee Transactions On Neural Networks and Learning Systems. PMID 34982703 DOI: 10.1109/TNNLS.2021.3137178   
2022 Uribe-Salazar JM, Kaya G, Sekar A, Weyenberg K, Ingamells C, Dennis MY. Evaluation of CRISPR gene-editing tools in zebrafish. Bmc Genomics. 23: 12. PMID 34986794 DOI: 10.1186/s12864-021-08238-1   
2022 Trewhella J. Recent advances in small-angle scattering and its expanding impact in structural biology. Structure (London, England : 1993). 30: 15-23. PMID 34995477 DOI: 10.1016/j.str.2021.09.008   
2022 Baek KT, Kepp KP. Data set and fitting dependencies when estimating protein mutant stability: Toward simple, balanced, and interpretable models. Journal of Computational Chemistry. PMID 35040492 DOI: 10.1002/jcc.26810   
2022 Hsu C, Nisonoff H, Fannjiang C, Listgarten J. Learning protein fitness models from evolutionary and assay-labeled data. Nature Biotechnology. PMID 35039677 DOI: 10.1038/s41587-021-01146-5   
2022 Enoch SJ, Hasarova Z, Cronin MTD, Bridgwood K, Rao S, Kluxen FM, Frericks M. Sub-structure-based category formation for the prioritisation of genotoxicity hazard assessment for pesticide residues: Sulphonyl ureas. Regulatory Toxicology and Pharmacology : Rtp. 129: 105115. PMID 35017022 DOI: 10.1016/j.yrtph.2022.105115   
2022 Contessoto VG, de Oliveira VM, Leite VBP. Coarse-Grained Simulations of Protein Folding: Bridging Theory and Experiments. Methods in Molecular Biology (Clifton, N.J.). 2376: 303-315. PMID 34845616 DOI: 10.1007/978-1-0716-1716-8_16   
2022 Wu Y, Chua EHZ, Ng AWT, Boot A, Rozen SG. Accuracy of mutational signature software on correlated signatures. Scientific Reports. 12: 390. PMID 35013428 DOI: 10.1038/s41598-021-04207-6   
2022 Ha M, Wang D, Liu D. A Novel Value Iteration Scheme With Adjustable Convergence Rate. Ieee Transactions On Neural Networks and Learning Systems. PMID 35089866 DOI: 10.1109/TNNLS.2022.3143527   
2022 Jin N, Wang C, Sun D, Li Z, Zhou K. MTPA control of permanent magnet synchronous motor based on dual-vector model predictive control. Plos One. 17: e0262135. PMID 35061752 DOI: 10.1371/journal.pone.0262135   
2022 Ries B, Normak K, Weiß RG, Rieder S, Barros EP, Champion C, König G, Riniker S. Relative free-energy calculations for scaffold hopping-type transformations with an automated RE-EDS sampling procedure. Journal of Computer-Aided Molecular Design. PMID 34978000 DOI: 10.1007/s10822-021-00436-z   
2022 Xu Y, Yu Z, Cao W, Chen CLP. Adaptive Dense Ensemble Model for Text Classification. Ieee Transactions On Cybernetics. PMID 34990374 DOI: 10.1109/TCYB.2021.3133106