Krishna M. Roskin, Ph.D. - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

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Year Citation  Score
2015 Wang C, Liu Y, Cavanagh MM, Le Saux S, Qi Q, Roskin KM, Looney TJ, Lee JY, Dixit V, Dekker CL, Swan GE, Goronzy JJ, Boyd SD. B-cell repertoire responses to varicella-zoster vaccination in human identical twins. Proceedings of the National Academy of Sciences of the United States of America. 112: 500-5. PMID 25535378 DOI: 10.1073/pnas.1415875112  0.4
2014 Trama AM, Moody MA, Alam SM, Jaeger FH, Lockwood B, Parks R, Lloyd KE, Stolarchuk C, Scearce R, Foulger A, Marshall DJ, Whitesides JF, Jeffries TL, Wiehe K, Morris L, ... ... Roskin KM, et al. HIV-1 envelope gp41 antibodies can originate from terminal ileum B cells that share cross-reactivity with commensal bacteria. Cell Host & Microbe. 16: 215-26. PMID 25121750 DOI: 10.1016/j.chom.2014.07.003  0.4
2014 Jackson KJ, Liu Y, Roskin KM, Glanville J, Hoh RA, Seo K, Marshall EL, Gurley TC, Moody MA, Haynes BF, Walter EB, Liao HX, Albrecht RA, García-Sastre A, Chaparro-Riggers J, et al. Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. Cell Host & Microbe. 16: 105-14. PMID 24981332 DOI: 10.1016/j.chom.2014.05.013  0.4
2014 Wang C, Liu Y, Xu LT, Jackson KJ, Roskin KM, Pham TD, Laserson J, Marshall EL, Seo K, Lee JY, Furman D, Koller D, Dekker CL, Davis MM, Fire AZ, et al. Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires. Journal of Immunology (Baltimore, Md. : 1950). 192: 603-11. PMID 24337376 DOI: 10.4049/jimmunol.1301384  0.4
2013 Merker JD, Roskin KM, Ng D, Pan C, Fisk DG, King JJ, Hoh R, Stadler M, Okumoto LM, Abidi P, Hewitt R, Jones CD, Gojenola L, Clark MJ, Zhang B, et al. Comprehensive whole-genome sequencing of an early-stage primary myelofibrosis patient defines low mutational burden and non-recurrent candidate genes. Haematologica. 98: 1689-96. PMID 23872309 DOI: 10.3324/haematol.2013.092379  0.4
2013 Parameswaran P, Liu Y, Roskin KM, Jackson KKL, Dixit VP, Lee JY, Artiles KL, Zompi S, Vargas MJ, Simen BB, Hanczaruk B, McGowan KR, Tariq MA, Pourmand N, Koller D, et al. Convergent antibody signatures in human dengue Cell Host and Microbe. 13: 691-700. PMID 23768493 DOI: 10.1016/j.chom.2013.05.008  0.4
2013 Liao HX, Lynch R, Zhou T, Gao F, Munir Alam S, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Mullikin JC, Gnanakaran S, Hraber P, et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus Nature. 496: 469-476. PMID 23552890 DOI: 10.1038/nature12053  0.4
2011 Roskin KM, Paten B, Haussler D. Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization Bmc Bioinformatics. 12. PMID 21569267 DOI: 10.1186/1471-2105-12-144  0.4
2011 Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, et al. ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Research. 39: D871-5. PMID 21037257 DOI: 10.1093/nar/gkq1017  0.4
2004 Roskin KM, Diekhans M, Haussler D. Score functions for determining regional conservation in two-species local alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 395-411. PMID 15285898 DOI: 10.1089/1066527041410328  0.4
2004 Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Research. 14: 708-15. PMID 15060014 DOI: 10.1101/gr.1933104  0.4
2004 Jensen-Seaman MI, Furey TS, Payseur BA, Lu Y, Roskin KM, Chen CF, Thomas MA, Haussler D, Jacob HJ. Comparative recombination rates in the rat, mouse, and human genomes. Genome Research. 14: 528-38. PMID 15059993 DOI: 10.1101/gr.1970304  0.4
2004 Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC. Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. Genome Research. 14: 517-27. PMID 15059992 DOI: 10.1101/gr.1984404  0.4
2004 Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Research. 32: D493-6. PMID 14681465 DOI: 10.1093/nar/gkh103  0.4
2003 Hardison RC, Chiaromonte F, Kolbe D, Wang H, Petrykowska H, Elnitski L, Yang S, Giardine B, Zhang Y, Riemer C, Schwartz S, Haussler D, Roskin KM, Weber RJ, Diekhans M, et al. Global predictions and tests of erythroid regulatory regions. Cold Spring Harbor Symposia On Quantitative Biology. 68: 335-44. PMID 15338635  0.4
2003 Chiaromonte F, Weber RJ, Roskin KM, Diekhans M, Kent WJ, Haussler D. The share of human genomic DNA under selection estimated from human-mouse genomic alignments. Cold Spring Harbor Symposia On Quantitative Biology. 68: 245-54. PMID 15338624  0.4
2003 Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, Schwartz S, Furey TS, Whelan S, Goldman N, Smit A, et al. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Research. 13: 13-26. PMID 12529302 DOI: 10.1101/gr.844103  0.4
2003 Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ. The UCSC Genome Browser Database. Nucleic Acids Research. 31: 51-4. PMID 12519945 DOI: 10.1093/nar/gkg129  0.4
2003 Lodha SK, Roskin KM, Renteria JC. Hierarchical topology-preserving simplification of terrains Visual Computer. 19: 493-504.  0.4
2003 Roskin KM, Diekhans M, Haussler D. Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 257-266.  0.4
2002 Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. The human genome browser at UCSC. Genome Research. 12: 996-1006. PMID 12045153 DOI: 10.1101/gr.229102. Article published online before print in May 2002  0.4
2001 Lodha SK, Venable E, Marsh D, Meads D, Manh N, Robinson C, Roskin K. Use of natural sounds and metaphors for data perceptualization Proceedings of Spie - the International Society For Optical Engineering. 4302: 180-190. DOI: 10.1117/12.424927  0.4
2000 Lodha SK, Renteria JC, Roskin KM. Topology preserving compression of 2D vector fields Proceedings of the Ieee Visualization Conference. 343-350+574.  0.4
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