Gautam Dantas, Ph.D. - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
protein structure prediction

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Di Venanzio G, Flores-Mireles AL, Calix JJ, Haurat MF, Scott NE, Palmer LD, Potter RF, Hibbing ME, Friedman L, Wang B, Dantas G, Skaar EP, Hultgren SJ, Feldman MF. Urinary tract colonization is enhanced by a plasmid that regulates uropathogenic Acinetobacter baumannii chromosomal genes. Nature Communications. 10: 2763. PMID 31235751 DOI: 10.1038/s41467-019-10706-y  0.56
2019 Crook N, Ferreiro A, Gasparrini AJ, Pesesky MW, Gibson MK, Wang B, Sun X, Condiotte Z, Dobrowolski S, Peterson D, Dantas G. Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut. Cell Host & Microbe. PMID 30926240 DOI: 10.1016/j.chom.2019.02.005  0.84
2019 Markley JL, Fang L, Gasparrini AJ, Symister CT, Kumar H, Tolia NH, Dantas G, Wencewicz TA. Semisynthetic Analogues of Anhydrotetracycline as Inhibitors of Tetracycline Destructase Enzymes. Acs Infectious Diseases. PMID 30835428 DOI: 10.1021/acsinfecdis.8b00349  0.84
2019 Crofts TS, Sontha P, King AO, Wang B, Biddy BA, Zanolli N, Gaumnitz J, Dantas G. Discovery and Characterization of a Nitroreductase Capable of Conferring Bacterial Resistance to Chloramphenicol. Cell Chemical Biology. PMID 30799223 DOI: 10.1016/j.chembiol.2019.01.007  0.84
2018 Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G. Publisher Correction: Shared strategies for β-lactam catabolism in the soil microbiome. Nature Chemical Biology. PMID 30591731 DOI: 10.1038/s41589-018-0208-z  0.84
2018 Potter RF, Lainhart W, Twentyman J, Wallace MA, Wang B, Burnham CA, Rosen DA, Dantas G. Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola. Mbio. 9. PMID 30563902 DOI: 10.1128/mBio.02481-18  0.56
2018 Baumann-Dudenhoeffer AM, D'Souza AW, Tarr PI, Warner BB, Dantas G. Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes. Nature Medicine. PMID 30374198 DOI: 10.1038/s41591-018-0216-2  0.48
2018 Tsukayama P, Boolchandani M, Patel S, Pehrsson EC, Gibson MK, Chiou KL, Jolly CJ, Rogers J, Phillips-Conroy JE, Dantas G. Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes. Msystems. 3. PMID 29963641 DOI: 10.1128/mSystems.00016-18  0.48
2018 Keen EC, Dantas G. Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity. Trends in Microbiology. PMID 29909042 DOI: 10.1016/j.tim.2018.05.009  0.68
2018 Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G. Shared strategies for β-lactam catabolism in the soil microbiome. Nature Chemical Biology. PMID 29713061 DOI: 10.1038/s41589-018-0052-1  0.84
2018 Keen EC, Crofts TS, Dantas G. Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy. Clinical Chemistry. PMID 29691222 DOI: 10.1373/clinchem.2017.286229  0.84
2018 Ferreiro A, Crook N, Gasparrini AJ, Dantas G. Multiscale Evolutionary Dynamics of Host-Associated Microbiomes. Cell. 172: 1216-1227. PMID 29522743 DOI: 10.1016/j.cell.2018.02.015  0.84
2017 Keen EC, Bliskovsky VV, Adhya SL, Dantas G. Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10. Genome Announcements. 5. PMID 29146837 DOI: 10.1128/genomeA.01295-17  0.68
2017 Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G. Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria. Genome Announcements. 5. PMID 28798166 DOI: 10.1128/genomeA.00653-17  0.84
2017 Park J, Gasparrini AJ, Reck MR, Symister CT, Elliott JL, Vogel JP, Wencewicz TA, Dantas G, Tolia NH. Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes. Nature Chemical Biology. PMID 28481346 DOI: 10.1038/nchembio.2376  0.84
2017 Crofts TS, Gasparrini AJ, Dantas G. Next-generation approaches to understand and combat the antibiotic resistome. Nature Reviews. Microbiology. PMID 28392565 DOI: 10.1038/nrmicro.2017.28  0.84
2016 Adu-Oppong B, Gasparrini AJ, Dantas G. Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes. Annals of the New York Academy of Sciences. PMID 27768825 DOI: 10.1111/nyas.13257  0.84
2016 Gibson MK, Wang B, Ahmadi S, Burnham CA, Tarr PI, Warner BB, Dantas G. Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome. Nature Microbiology. 1: 16024. PMID 27572443 DOI: 10.1038/nmicrobiol.2016.24  0.56
2016 Gasparrini AJ, Crofts TS, Gibson MK, Tarr PI, Warner BB, Dantas G. Antibiotic perturbation of the preterm infant gut microbiome and resistome. Gut Microbes. 0. PMID 27472377 DOI: 10.1080/19490976.2016.1218584  0.64
2016 Pehrsson EC, Tsukayama P, Patel S, Mejía-Bautista M, Sosa-Soto G, Navarrete KM, Calderon M, Cabrera L, Hoyos-Arango W, Bertoli MT, Berg DE, Gilman RH, Dantas G. Interconnected microbiomes and resistomes in low-income human habitats. Nature. 533: 212-6. PMID 27172044 DOI: 10.1038/nature17672  0.64
2016 Yoneda A, Henson WR, Goldner NK, Park KJ, Forsberg KJ, Kim SJ, Pesesky MW, Foston M, Dantas G, Moon TS. Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630. Nucleic Acids Research. PMID 26837573 DOI: 10.1093/nar/gkw055  0.64
2015 Kaminski J, Gibson MK, Franzosa EA, Segata N, Dantas G, Huttenhower C. High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. Plos Computational Biology. 11: e1004557. PMID 26682918 DOI: 10.1371/journal.pcbi.1004557  0.64
2015 Forsberg KJ, Patel S, Witt E, Wang B, Ellison T, Dantas G. Functional selections of soil metagenomes identify tolerance genes against lignocellulose-derived inhibitors. Applied and Environmental Microbiology. PMID 26546427 DOI: 10.1128/AEM.02838-15  0.64
2015 Gonzales PR, Pesesky MW, Bouley R, Ballard A, Biddy BA, Suckow MA, Wolter WR, Schroeder VA, Burnham CD, Mobashery S, Chang M, Dantas G. Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA. Nature Chemical Biology. 11: 855-861. PMID 26368589 DOI: 10.1038/nchembio.1911  0.56
2015 Gibson MK, Crofts TS, Dantas G. Antibiotics and the developing infant gut microbiota and resistome. Current Opinion in Microbiology. 27: 51-56. PMID 26241507 DOI: 10.1016/j.mib.2015.07.007  0.64
2015 Clemente JC, Pehrsson EC, Blaser MJ, Sandhu K, Gao Z, Wang B, Magris M, Hidalgo G, Contreras M, Noya-Alarcón Ó, Lander O, McDonald J, Cox M, Walter J, Oh PL, ... ... Dantas G, et al. The microbiome of uncontacted Amerindians. Science Advances. 1. PMID 26229982 DOI: 10.1126/sciadv.1500183  0.56
2015 Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao IM, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G. Erratum: Gut resistome development in healthy twin pairs in the first year of life. Microbiome. 3: 29. PMID 26207183 DOI: 10.1186/s40168-015-0095-4  0.56
2015 Moore AM, Ahmadi S, Patel S, Gibson MK, Wang B, Ndao MI, Deych E, Shannon W, Tarr PI, Warner BB, Dantas G. Gut resistome development in healthy twin pairs in the first year of life. Microbiome. 3: 27. PMID 26113976 DOI: 10.1186/s40168-015-0090-9  0.56
2015 Forsberg KJ, Patel S, Wencewicz TA, Dantas G. The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes. Chemistry & Biology. PMID 26097034 DOI: 10.1016/j.chembiol.2015.05.017  0.64
2015 Pesesky MW, Hussain T, Wallace M, Wang B, Andleeb S, Burnham CA, Dantas G. KPC and NDM-1 genes in related Enterobacteriaceae strains and plasmids from Pakistan and the United States. Emerging Infectious Diseases. 21: 1034-7. PMID 25988236 DOI: 10.3201/eid2106.141504  0.64
2015 Perron GG, Whyte L, Turnbaugh PJ, Goordial J, Hanage WP, Dantas G, Desai MM. Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics. Plos One. 10: e0069533. PMID 25807523 DOI: 10.1371/journal.pone.0069533  0.64
2015 Gibson MK, Forsberg KJ, Dantas G. Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology. The Isme Journal. 9: 207-16. PMID 25003965 DOI: 10.1038/ismej.2014.106  0.64
2015 Gonzales PR, Pesesky MW, Bouley R, Ballard A, Biddy BA, Suckow MA, Wolter WR, Schroeder VA, Burnham CAD, Mobashery S, Chang M, Dantas G. Synergistic, collaterally sensitive β-lactam combinations suppress resistance in MRSA Nature Chemical Biology. DOI: 10.1038/nchembio.1911  0.64
2014 Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, ... ... Dantas G, et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science (New York, N.Y.). 345: 1048-52. PMID 25170151 DOI: 10.1126/science.1254529  0.64
2014 Gibson MK, Pesesky MW, Dantas G. The yin and yang of bacterial resilience in the human gut microbiota. Journal of Molecular Biology. 426: 3866-76. PMID 24911583 DOI: 10.1016/j.jmb.2014.05.029  0.64
2014 Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G. Bacterial phylogeny structures soil resistomes across habitats. Nature. 509: 612-6. PMID 24847883 DOI: 10.1038/nature13377  0.64
2014 Dantas G, Sommer MOA. How to fight back against antibiotic resistance American Scientist. 102: 42-51. DOI: 10.1511/2014.106.42  0.64
2013 Moore AM, Patel S, Forsberg KJ, Wang B, Bentley G, Razia Y, Qin X, Tarr PI, Dantas G. Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes. Plos One. 8: e78822. PMID 24236055 DOI: 10.1371/journal.pone.0078822  0.64
2013 Dantas G, Sommer MOA, Degnan PH, Goodman AL. Experimental approaches for defining functional roles of microbes in the human gut Annual Review of Microbiology. 67: 459-475. PMID 24024637 DOI: 10.1146/annurev-micro-092412-155642  0.64
2013 Pehrsson EC, Forsberg KJ, Gibson MK, Ahmadi S, Dantas G. Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs. Frontiers in Microbiology. 4: 145. PMID 23760651 DOI: 10.3389/fmicb.2013.00145  0.64
2012 Dantas G, Sommer MO. Context matters - the complex interplay between resistome genotypes and resistance phenotypes. Current Opinion in Microbiology. 15: 577-82. PMID 22954750 DOI: 10.1016/j.mib.2012.07.004  0.64
2012 Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MO, Dantas G. The shared antibiotic resistome of soil bacteria and human pathogens. Science (New York, N.Y.). 337: 1107-11. PMID 22936781 DOI: 10.1126/science.1220761  0.64
2011 Moore AM, Munck C, Sommer MO, Dantas G. Functional metagenomic investigations of the human intestinal microbiota. Frontiers in Microbiology. 2: 188. PMID 22022321 DOI: 10.3389/fmicb.2011.00188  0.64
2011 Sommer MO, Dantas G. Antibiotics and the resistant microbiome. Current Opinion in Microbiology. 14: 556-63. PMID 21802347 DOI: 10.1016/j.mib.2011.07.005  0.64
2011 Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/pnas.1102938108  0.64
2011 Dantas G, Sommer MOA. Ecological and Clinical Consequences of Antibiotic Subsistence by Environmental Microbes Antimicrobial Resistance in the Environment. 29-41. DOI: 10.1002/9781118156247.ch4  0.64
2007 Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D. High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design. Journal of Molecular Biology. 366: 1209-21. PMID 17196978 DOI: 10.1016/j.jmb.2006.11.080  0.64
2006 Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of Molecular Biology. 362: 1004-24. PMID 16949611 DOI: 10.1016/j.jmb.2006.07.092  0.64
2006 Dobson N, Dantas G, Baker D, Varani G. High-resolution structural validation of the computational redesign of human U1A protein. Structure (London, England : 1993). 14: 847-56. PMID 16698546 DOI: 10.1016/j.str.2006.02.011  0.64
2005 Dobson N, Dantas G, Varani G. 1H, 13C and 15N resonance assignments of URNdesign, a computationally redesigned RRM protein. Journal of Biomolecular Nmr. 33: 135. PMID 16258832 DOI: 10.1007/s10858-005-1928-4  0.64
2004 von Grotthuss M, Wyrwicz LS, Pas J, Rychlewski L. Predicting protein structures accurately. Science (New York, N.Y.). 304: 1597-9; author reply. PMID 15192202 DOI: 10.1126/science.304.5677.1597b  0.64
2003 Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, Baker D. Design of a novel globular protein fold with atomic-level accuracy. Science (New York, N.Y.). 302: 1364-8. PMID 14631033 DOI: 10.1126/science.1089427  0.64
2003 Dantas G, Kuhlman B, Callender D, Wong M, Baker D. A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. Journal of Molecular Biology. 332: 449-60. PMID 12948494 DOI: 10.1016/S0022-2836(03)00888-X  0.64
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