Justin Ashworth, Ph.D. - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
protein structure prediction

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Ashworth J, Turkarslan S, Harris M, Orellana MV, Baliga NS. Pan-transcriptomic analysis identifies coordinated and orthologous functional modules in the diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum. Marine Genomics. PMID 26560047 DOI: 10.1016/j.margen.2015.10.011  1
2015 Ament SA, Szelinger S, Glusman G, Ashworth J, Hou L, Akula N, Shekhtman T, Badner JA, Brunkow ME, Mauldin DE, Stittrich AB, Rouleau K, Detera-Wadleigh SD, Nurnberger JI, Edenberg HJ, et al. Rare variants in neuronal excitability genes influence risk for bipolar disorder. Proceedings of the National Academy of Sciences of the United States of America. 112: 3576-81. PMID 25730879 DOI: 10.1073/pnas.1424958112  1
2015 Hennon GMM, Ashworth J, Groussman RD, Berthiaume C, Morales RL, Baliga NS, Orellana MV, Armbrust EV. Diatom acclimation to elevated CO 2 via cAMP signalling and coordinated gene expression Nature Climate Change. 5: 761-765. DOI: 10.1038/nclimate2683  1
2014 Plaisier CL, Lo FY, Ashworth J, Brooks AN, Beer KD, Kaur A, Pan M, Reiss DJ, Facciotti MT, Baliga NS. Evolution of context dependent regulation by expansion of feast/famine regulatory proteins. Bmc Systems Biology. 8: 122. PMID 25394904 DOI: 10.1186/s12918-014-0122-2  1
2014 Ashworth J, Bernard B, Reynolds S, Plaisier CL, Shmulevich I, Baliga NS. Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers. Nucleic Acids Research. 42: 12973-83. PMID 25378323 DOI: 10.1093/nar/gku1031  1
2014 Ashworth J, Plaisier CL, Lo FY, Reiss DJ, Baliga NS. Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction. Plos One. 9: e107863. PMID 25255272 DOI: 10.1371/journal.pone.0107863  1
2014 Stittrich AB, Lehman A, Bodian DL, Ashworth J, Zong Z, Li H, Lam P, Khromykh A, Iyer RK, Vockley JG, Baveja R, Silva ES, Dixon J, Leon EL, Solomon BD, et al. Mutations in NOTCH1 cause Adams-Oliver syndrome. American Journal of Human Genetics. 95: 275-84. PMID 25132448 DOI: 10.1016/j.ajhg.2014.07.011  1
2014 Thyme SB, Boissel SJ, Arshiya Quadri S, Nolan T, Baker DA, Park RU, Kusak L, Ashworth J, Baker D. Reprogramming homing endonuclease specificity through computational design and directed evolution. Nucleic Acids Research. 42: 2564-76. PMID 24270794 DOI: 10.1093/nar/gkt1212  1
2014 Ashworth J, Plaisier CL, Lo FY, Reiss DJ, Baliga NS. Correction: Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction Plos One. 9. DOI: 10.1371/journal.0114450  1
2013 Ashworth J, Coesel S, Lee A, Armbrust EV, Orellana MV, Baliga NS. Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana. Proceedings of the National Academy of Sciences of the United States of America. 110: 7518-23. PMID 23596211 DOI: 10.1073/pnas.1300962110  1
2012 Ashworth J, Wurtmann EJ, Baliga NS. Reverse engineering systems models of regulation: discovery, prediction and mechanisms. Current Opinion in Biotechnology. 23: 598-603. PMID 22209016 DOI: 10.1016/j.copbio.2011.12.005  1
2011 Fleishman SJ, Leaver-Fay A, Corn JE, Strauch EM, Khare SD, Koga N, Ashworth J, Murphy P, Richter F, Lemmon G, Meiler J, Baker D. RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite. Plos One. 6: e20161. PMID 21731610 DOI: 10.1371/journal.pone.0020161  1
2010 Ashworth J, Taylor GK, Havranek JJ, Quadri SA, Stoddard BL, Baker D. Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Research. 38: 5601-8. PMID 20435674 DOI: 10.1093/nar/gkq283  1
2009 Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D. Exploitation of binding energy for catalysis and design. Nature. 461: 1300-4. PMID 19865174 DOI: 10.1038/nature08508  1
2009 Ashworth J, Baker D. Assessment of the optimization of affinity and specificity at protein-DNA interfaces. Nucleic Acids Research. 37: e73. PMID 19389725 DOI: 10.1093/nar/gkp242  1
2007 Eastberg JH, McConnell Smith A, Zhao L, Ashworth J, Shen BW, Stoddard BL. Thermodynamics of DNA target site recognition by homing endonucleases. Nucleic Acids Research. 35: 7209-21. PMID 17947319 DOI: 10.1093/nar/gkm867  1
2006 Ashworth J, Havranek JJ, Duarte CM, Sussman D, Monnat RJ, Stoddard BL, Baker D. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature. 441: 656-9. PMID 16738662 DOI: 10.1038/nature04818  1
Show low-probability matches.