Noah Ollikainen, Ph.D. - Publications

Affiliations: 
Biological and Medical Informatics University of California, San Francisco, San Francisco, CA 

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Chen CK, Blanco M, Jackson C, Aznauryan E, Ollikainen N, Surka C, Chow A, Cerase A, McDonel P, Guttman M. Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing. Science (New York, N.Y.). PMID 27492478 DOI: 10.1126/science.aae0047  0.92
2015 Ollikainen N, de Jong RM, Kortemme T. Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity. Plos Computational Biology. 11: e1004335. PMID 26397464 DOI: 10.1371/journal.pcbi.1004335  0.92
2015 Ó Conchúir S, Barlow KA, Pache RA, Ollikainen N, Kundert K, O'Meara MJ, Smith CA, Kortemme T. A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design. Plos One. 10: e0130433. PMID 26335248 DOI: 10.1371/journal.pone.0130433  0.92
2014 Melero C, Ollikainen N, Harwood I, Karpiak J, Kortemme T. Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognition. Proceedings of the National Academy of Sciences of the United States of America. 111: 15426-31. PMID 25313039 DOI: 10.1073/pnas.1410624111  0.92
2013 Jackson EL, Ollikainen N, Covert AW, Kortemme T, Wilke CO. Amino-acid site variability among natural and designed proteins. Peerj. 1: e211. PMID 24255821 DOI: 10.7717/peerj.211  0.92
2013 Ollikainen N, Kortemme T. Computational protein design quantifies structural constraints on amino acid covariation. Plos Computational Biology. 9: e1003313. PMID 24244128 DOI: 10.1371/journal.pcbi.1003313  0.92
2013 Ollikainen N, Smith CA, Fraser JS, Kortemme T. Flexible backbone sampling methods to model and design protein alternative conformations. Methods in Enzymology. 523: 61-85. PMID 23422426 DOI: 10.1016/B978-0-12-394292-0.00004-7  0.92
2010 David DC, Ollikainen N, Trinidad JC, Cary MP, Burlingame AL, Kenyon C. Widespread protein aggregation as an inherent part of aging in C. elegans. Plos Biology. 8: e1000450. PMID 20711477 DOI: 10.1371/journal.pbio.1000450  0.92
2009 Ollikainen N, Sentovich E, Coelho C, Kuehlmann A, Kortemme T. SAT-based protein design Ieee/Acm International Conference On Computer-Aided Design, Digest of Technical Papers, Iccad. 128-135.  0.92
2008 Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, Bafna V, Smith RD, Pevzner PA. Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes. Genome Research. 18: 1133-42. PMID 18426904 DOI: 10.1101/gr.074344.107  0.92
2007 Baker ME, Chandsawangbhuwana C, Ollikainen N. Structural analysis of the evolution of steroid specificity in the mineralocorticoid and glucocorticoid receptors. Bmc Evolutionary Biology. 7: 24. PMID 17306029 DOI: 10.1186/1471-2148-7-24  0.92
2007 Goodman D, Ollikainen N, Sholley C. Baculovirus phylogeny based on genome rearrangements Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4751: 69-82.  0.92
2006 Ollikainen N, Chandsawangbhuwana C, Baker ME. Evolution of the thyroid hormone, retinoic acid, ecdysone and liver X receptors. Integrative and Comparative Biology. 46: 815-26. PMID 21672787 DOI: 10.1093/icb/icl035  0.92
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