Samuel S. Cho, Ph.D. - Publications

Affiliations: 
2001-2007 Chemistry University of California, San Diego, La Jolla, CA 
 2007-2010 Institute for Physical Science and Technology University of Maryland, College Park, College Park, MD 
 2010- Physics and Computer Science Wake Forest University, Winston-Salem, NC, United States 
Area:
protein folding, regulatory networks, glasses, many-body phenomena
Website:
http://www.wfu.edu/~choss/

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Li W, Lucioni T, Li R, Bonin K, Cho SS, Guthold M. Stretching Single Fibrin Fibers Hampers Their Lysis. Acta Biomaterialia. PMID 28754649 DOI: 10.1016/J.Actbio.2017.07.037  1
2015 Li R, Macnamara LM, Leuchter JD, Alexander RW, Cho SS. MD Simulations of tRNA and Aminoacyl-tRNA Synthetases: Dynamics, Folding, Binding, and Allostery. International Journal of Molecular Sciences. 16: 15872-902. PMID 26184179 DOI: 10.3390/Ijms160715872  1
2015 Burg J, Pauca PV, Turkett W, Fulp E, Cho SS, Santago P, Cañas D, Gage HD. Engaging non-traditional students in computer science through socially-inspired learning and sustained mentoring Sigcse 2015 - Proceedings of the 46th Acm Technical Symposium On Computer Science Education. 639-644. DOI: 10.1145/2676723.2677266  1
2013 Li R, Chen R, Chen P, Wen Y, Ke PC, Cho SS. Computational and experimental characterizations of silver nanoparticle-apolipoprotein biocorona. The Journal of Physical Chemistry. B. 117: 13451-6. PMID 24073791 DOI: 10.1021/Jp4061158  1
2013 Li R, Ge HW, Cho SS. Sequence-dependent base-stacking stabilities guide tRNA folding energy landscapes. The Journal of Physical Chemistry. B. 117: 12943-52. PMID 23841777 DOI: 10.1021/Jp402114P  1
2013 Proctor AJ, Stevens CA, Cho SS. GPU-optimized hybrid neighbor/cell list algorithm for coarse-grained MD simulations of protein and RNA folding and assembly 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 633-640. DOI: 10.1145/2506583.2506649  1
2013 Proctor AJ, Lipscomb TJ, Zou A, Anderson JA, Cho SS. Performance analyses of a parallel verlet neighbor list algorithm for gpu-optimized MD simulations Proceedings of the 2012 Ase International Conference On Biomedical Computing, Biomedcom 2012. 14-19. DOI: 10.1109/BioMedCom.2012.9  1
2012 Koculi E, Cho SS, Desai R, Thirumalai D, Woodson SA. Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures. Nucleic Acids Research. 40: 8011-20. PMID 22641849 DOI: 10.1093/Nar/Gks468  1
2012 Lipscomb TJ, Zou A, Cho SS. Parallel Verlet Neighbor List algorithm for GPU-optimized MD simulations 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 321-328. DOI: 10.1145/2382936.2382977  1
2011 Biyun S, Cho SS, Thirumalai D. Folding of human telomerase RNA pseudoknot using ion-jump and temperature-quench simulations. Journal of the American Chemical Society. 133: 20634-43. PMID 22082261 DOI: 10.1021/Ja2092823  1
2011 Guthold M, Cho SS. Fibrinogen unfolding mechanisms are not too much of a stretch. Structure (London, England : 1993). 19: 1536-8. PMID 22078551 DOI: 10.1016/J.Str.2011.10.008  1
2011 Cho SS, Reddy G, Straub JE, Thirumalai D. Entropic stabilization of proteins by TMAO. The Journal of Physical Chemistry. B. 115: 13401-7. PMID 21985427 DOI: 10.1021/Jp207289B  1
2011 Patro R, Ip CY, Bista S, Thirumalai D, Cho SS, Varshney A. MDMap: A system for data-driven layout and exploration of molecular dynamics simulations Ieee Symposium On Biological Data Visualization 2011, Biovis 2011 - Proceedings. 111-118. DOI: 10.1109/BioVis.2011.6094055  1
2009 Lenz P, Cho SS, Wolynes PG. Analysis of single molecule folding studies with replica correlation functions. Chemical Physics Letters. 471: 310-314. PMID 20161316 DOI: 10.1016/J.Cplett.2009.02.054  1
2009 Cho SS, Pincus DL, Thirumalai D. Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures. Proceedings of the National Academy of Sciences of the United States of America. 106: 17349-54. PMID 19805055 DOI: 10.1016/J.Bpj.2009.12.2573  1
2009 Cho SS, Levy Y, Wolynes PG. Quantitative criteria for native energetic heterogeneity influences in the prediction of protein folding kinetics. Proceedings of the National Academy of Sciences of the United States of America. 106: 434-9. PMID 19075236 DOI: 10.1073/Pnas.0810218105  1
2008 Pincus DL, Cho SS, Hyeon C, Thirumalai D. Minimal models for proteins and RNA from folding to function. Progress in Molecular Biology and Translational Science. 84: 203-50. PMID 19121703 DOI: 10.1016/S0079-6603(08)00406-6  1
2008 Cho SS, Weinkam P, Wolynes PG. Origins of barriers and barrierless folding in BBL. Proceedings of the National Academy of Sciences of the United States of America. 105: 118-23. PMID 18172203 DOI: 10.1073/Pnas.0709376104  1
2007 Ferreiro DU, Cervantes CF, Truhlar SM, Cho SS, Wolynes PG, Komives EA. Stabilizing IkappaBalpha by "consensus" design. Journal of Molecular Biology. 365: 1201-16. PMID 17174335 DOI: 10.1016/J.Jmb.2006.11.044  1
2006 Cho SS, Levy Y, Wolynes PG. P versus Q: structural reaction coordinates capture protein folding on smooth landscapes. Proceedings of the National Academy of Sciences of the United States of America. 103: 586-91. PMID 16407126 DOI: 10.1073/Pnas.0509768103  1
2005 Ferreiro DU, Cho SS, Komives EA, Wolynes PG. The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family. Journal of Molecular Biology. 354: 679-92. PMID 16257414 DOI: 10.1016/J.Jmb.2005.09.078  1
2005 Cho SS, Levy Y, Onuchic JN, Wolynes PG. Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation. Physical Biology. 2: S44-55. PMID 16204848 DOI: 10.1088/1478-3975/2/2/S05  1
2005 Levy Y, Cho SS, Shen T, Onuchic JN, Wolynes PG. Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery. Proceedings of the National Academy of Sciences of the United States of America. 102: 2373-8. PMID 15701699 DOI: 10.1073/Pnas.0409572102  1
2005 Levy Y, Cho SS, Onuchic JN, Wolynes PG. A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes. Journal of Molecular Biology. 346: 1121-45. PMID 15701522 DOI: 10.1016/J.Jmb.2004.12.021  1
2004 Wymore T, Hempel J, Cho SS, Mackerell AD, Nicholas HB, Deerfield DW. Molecular recognition of aldehydes by aldehyde dehydrogenase and mechanism of nucleophile activation. Proteins. 57: 758-71. PMID 15390260 DOI: 10.1002/Prot.20256  1
2004 Yang S, Cho SS, Levy Y, Cheung MS, Levine H, Wolynes PG, Onuchic JN. Domain swapping is a consequence of minimal frustration. Proceedings of the National Academy of Sciences of the United States of America. 101: 13786-91. PMID 15361578 DOI: 10.1073/Pnas.0403724101  1
2003 Pan Y, Huang N, Cho S, MacKerell AD. Consideration of molecular weight during compound selection in virtual target-based database screening Journal of Chemical Information and Computer Sciences. 43: 267-272. PMID 12546562 DOI: 10.1021/Ci020055F  1
2001 Izaguirre G, Pietruszko R, Cho S, MacKerell A. Human aldehyde dehydrogenase catalytic activity and structural interactions with coenzyme analogs. Journal of Biomolecular Structure & Dynamics. 19: 429-47. PMID 11790142 DOI: 10.1080/07391102.2001.10506752  1
1994 Goodall S, Reggia JA, Cho S. Modeling brain adaptation to focal damage Proceedings / the . Annual Symposium On Computer Application [Sic] in Medical Care. Symposium On Computer Applications in Medical Care. 860-864. PMID 7950047  1
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