| Year |
Citation |
Score |
| 2023 |
Copeland CJ, Roddy JW, Schmidt AK, Secor PR, Wheeler TJ. VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes. Biorxiv : the Preprint Server For Biology. PMID 37905003 DOI: 10.1101/2023.10.17.562434 |
0.323 |
|
| 2022 |
Hubley R, Wheeler TJ, Smit AFA. Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families. Nar Genomics and Bioinformatics. 4: lqac040. PMID 35591887 DOI: 10.1093/nargab/lqac040 |
0.327 |
|
| 2021 |
Storer J, Hubley R, Rosen J, Wheeler TJ, Smit AF. The Dfam community resource of transposable element families, sequence models, and genome annotations. Mobile Dna. 12: 2. PMID 33436076 DOI: 10.1186/s13100-020-00230-y |
0.306 |
|
| 2020 |
Nord A, Carey K, Hornbeck P, Wheeler T. Splice-Aware Multiple Sequence Alignment of Protein Isoforms. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2018: 200-210. PMID 31080963 DOI: 10.1145/3233547.3233592 |
0.333 |
|
| 2018 |
Olson D, Wheeler T. ULTRA: A Model Based Tool to Detect Tandem Repeats. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2018: 37-46. PMID 31080962 DOI: 10.1145/3233547.3233604 |
0.332 |
|
| 2015 |
Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ. The Dfam database of repetitive DNA families. Nucleic Acids Research. PMID 26612867 DOI: 10.1093/Nar/Gkv1272 |
0.364 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, ... Wheeler TJ, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.329 |
|
| 2015 |
Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. HMMER web server: 2015 update. Nucleic Acids Research. 43: W30-8. PMID 25943547 DOI: 10.1093/Nar/Gkv397 |
0.344 |
|
| 2014 |
Wheeler TJ, Clements J, Finn RD. Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. Bmc Bioinformatics. 15: 7. PMID 24410852 DOI: 10.1186/1471-2105-15-7 |
0.368 |
|
| 2013 |
Wheeler TJ, Eddy SR. nhmmer: DNA homology search with profile HMMs. Bioinformatics (Oxford, England). 29: 2487-9. PMID 23842809 DOI: 10.1093/Bioinformatics/Btt403 |
0.382 |
|
| 2013 |
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD. Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Research. 41: D70-82. PMID 23203985 DOI: 10.1093/Nar/Gks1265 |
0.44 |
|
| 2011 |
Tanifuji G, Onodera NT, Wheeler TJ, Dlutek M, Donaher N, Archibald JM. Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set. Genome Biology and Evolution. 3: 44-54. PMID 21147880 DOI: 10.1093/Gbe/Evq082 |
0.37 |
|
| 2010 |
Kececioglu J, Kim E, Wheeler T. Aligning protein sequences with predicted secondary structure. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 561-80. PMID 20377464 DOI: 10.1089/Cmb.2009.0222 |
0.352 |
|
| 2005 |
Cutter AD, Good JM, Pappas CT, Saunders MA, Starrett DM, Wheeler TJ. Transposable element orientation bias in the Drosophila melanogaster genome. Journal of Molecular Evolution. 61: 733-41. PMID 16315105 DOI: 10.1007/S00239-004-0243-0 |
0.322 |
|
| 2005 |
Hayden CA, Wheeler TJ, Jorgensen RA. Evaluating and improving cDNA sequence quality with cQC. Bioinformatics (Oxford, England). 21: 4414-5. PMID 16234324 DOI: 10.1093/Bioinformatics/Bti709 |
0.381 |
|
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