Ruibin Xi, Ph.D. - Publications

Affiliations: 
2009 Mathematics Washington University, Saint Louis, St. Louis, MO 

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Chang J, Tan W, Ling Z, Xi R, Shao M, Chen M, Luo Y, Zhao Y, Liu Y, Huang X, Xia Y, Hu J, Parker JS, Marron D, Cui Q, et al. Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations. Nature Communications. 8: 15290. PMID 28548104 DOI: 10.1038/ncomms15290  0.56
2016 Ping Z, Xia Y, Shen T, Parekh V, Siegal GP, Eltoum IE, He J, Chen D, Deng M, Xi R, Shen D. A microscopic landscape of the invasive breast cancer genome. Scientific Reports. 6: 27545. PMID 27283966 DOI: 10.1038/srep27545  1
2016 Xi R, Lee S, Xia Y, Kim TM, Park PJ. Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants. Nucleic Acids Research. PMID 27260798 DOI: 10.1093/nar/gkw491  1
2015 Shi JY, Xing Q, Duan M, Wang ZC, Yang LX, Zhao YJ, Wang XY, Liu Y, Deng M, Ding ZB, Ke AW, Zhou J, Fan J, Cao Y, Wang J, ... Xi R, et al. Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity. Oncotarget. PMID 26672766 DOI: 10.18632/oncotarget.6558  1
2015 De Los Angeles A, Ferrari F, Xi R, Fujiwara Y, Benvenisty N, Deng H, Hochedlinger K, Jaenisch R, Lee S, Leitch HG, Lensch MW, Lujan E, Pei D, Rossant J, Wernig M, et al. Hallmarks of pluripotency. Nature. 525: 469-78. PMID 26399828 DOI: 10.1038/nature15515  1
2015 Nam JY, Kim NK, Kim SC, Joung JG, Xi R, Lee S, Park PJ, Park WY. Evaluation of somatic copy number estimation tools for whole-exome sequencing data. Briefings in Bioinformatics. PMID 26210357 DOI: 10.1093/bib/bbv055  1
2015 Wang W, Liu S, Li F, Pan X, Li C, Zhang X, Ma Y, La Y, Xi R, Li T. Polymorphisms of the Ovine BMPR-IB, BMP-15 and FSHR and Their Associations with Litter Size in Two Chinese Indigenous Sheep Breeds. International Journal of Molecular Sciences. 16: 11385-97. PMID 25993301 DOI: 10.3390/ijms160511385  0.56
2015 Chen M, Wang S, Zheng J, Xi R. Preparation and characterization of Nanostructure MgAl2O4 powders Gongneng Cailiao/Journal of Functional Materials. 46: 24111-24113. DOI: 10.3969/j.issn.1001-9731.2015.24.022  0.56
2015 Xi R, Wang S, Li S, Li L, Jiang C. Preparation of exfoliated graphite/ZnO/Zn nanocomposite for supercapacitor applications Gongneng Cailiao/Journal of Functional Materials. 46: 11060-11064. DOI: 10.3969/j.issn.1001-9731.2015.11.013  0.56
2015 Lu YW, Wang SL, Li SJ, Li LQ, Xi R, Cheng M. Synthesis of needle-like ZnO nanorods films and the Photoluminescence Gongneng Cailiao/Journal of Functional Materials. 46: 10066-10071 and 1007. DOI: 10.3969/j.issn.1001-9731.2015.10.014  0.56
2013 Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer analysis project. Nature Genetics. 45: 1113-20. PMID 24071849 DOI: 10.1038/ng.2764  1
2013 Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ. Diverse mechanisms of somatic structural variations in human cancer genomes. Cell. 153: 919-29. PMID 23663786 DOI: 10.1016/j.cell.2013.04.010  1
2013 Kandoth C, Schultz N, Cherniack AD, Akbani R, Liu Y, Shen H, Robertson AG, Pashtan I, Shen R, Benz CC, Yau C, Laird PW, Ding L, Zhang W, et al. Integrated genomic characterization of endometrial carcinoma. Nature. 497: 67-73. PMID 23636398 DOI: 10.1038/nature12113  1
2013 Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ. Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes. Genome Research. 23: 217-27. PMID 23132910 DOI: 10.1101/gr.140301.112  1
2012 Xi R, Lee S, Park PJ. A survey of copy-number variation detection tools based on high-throughput sequencing data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit7.19. PMID 23074071 DOI: 10.1002/0471142905.hg0719s75  1
2012 Tan X, Hu L, Luquette LJ, Gao G, Liu Y, Qu H, Xi R, Lu ZJ, Park PJ, Elledge SJ. Systematic identification of synergistic drug pairs targeting HIV. Nature Biotechnology. 30: 1125-30. PMID 23064238 DOI: 10.1038/nbt.2391  1
2012 Hammerman PS, Voet D, Lawrence MS, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Imielinski M, Helman E, Hernandez B, Pho NH, ... ... Xi R, et al. Comprehensive genomic characterization of squamous cell lung cancers Nature. 489: 519-525. PMID 22960745 DOI: 10.1038/nature11404  1
2012 Xi R, Lin N, Chen Y, Kim Y. Compression and aggregation of Bayesian estimates for data intensive computing Knowledge and Information Systems. 33: 191-212. DOI: 10.1007/s10115-011-0459-4  1
2011 Kharchenko PV, Xi R, Park PJ. Evidence for dosage compensation between the X chromosome and autosomes in mammals. Nature Genetics. 43: 1167-9; author reply. PMID 22120048 DOI: 10.1038/ng.991  1
2011 Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion. Proceedings of the National Academy of Sciences of the United States of America. 108: E1128-36. PMID 22065754 DOI: 10.1073/pnas.1110574108  1
2011 Wang Y, He F, Wan Y, Meng M, Xu J, Zhang Y, Yi J, Feng C, Wang S, Xi R. Indirect competitive enzyme-linked immuno-sorbent assay (ELISA) for nitroimidazoles in food products. Food Additives & Contaminants. Part a, Chemistry, Analysis, Control, Exposure & Risk Assessment. 28: 619-26. PMID 21598142 DOI: 10.1080/19440049.2011.563366  0.56
2011 Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, ... Xi R, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/nature09725  1
2011 Zhang Y, He F, Wan Y, Meng M, Xu J, Yi J, Wang Y, Feng C, Wang S, Xi R. Generation of anti-trenbolone monoclonal antibody and establishment of an indirect competitive enzyme-linked immunosorbent assay for detection of trenbolone in animal tissues, feed and urine. Talanta. 83: 732-7. PMID 21147313 DOI: 10.1016/j.talanta.2010.10.020  0.56
2011 Lin N, Xi R. Aggregated estimating equation estimation Statistics and Its Interface. 4: 73-84.  1
2010 Xi R, Kim TM, Park PJ. Detecting structural variations in the human genome using next generation sequencing. Briefings in Functional Genomics. 9: 405-15. PMID 21216738 DOI: 10.1093/bfgp/elq025  1
2010 Kim TM, Luquette LJ, Xi R, Park PJ. rSW-seq: algorithm for detection of copy number alterations in deep sequencing data. Bmc Bioinformatics. 11: 432. PMID 20718989 DOI: 10.1186/1471-2105-11-432  1
2010 Lin N, Xi R. Fast surrogates of U-statistics Computational Statistics and Data Analysis. 54: 16-24. DOI: 10.1016/j.csda.2009.08.009  1
2009 Xi R, Lin N, Chen Y. Compression and aggregation for logistic regression analysis in data cubes Ieee Transactions On Knowledge and Data Engineering. 21: 479-492. DOI: 10.1109/TKDE.2008.186  1
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