Golnaz Vahedi, Ph.D. - Publications

Affiliations: 
2009 Texas A & M University, College Station, TX, United States 

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Richard AC, Peters JE, Lee JC, Vahedi G, Schäffer AA, Siegel RM, Lyons PA, Smith KG. Targeted genomic analysis reveals widespread autoimmune disease association with regulatory variants in the TNF superfamily cytokine signalling network. Genome Medicine. 8: 76. PMID 27435189 DOI: 10.1186/s13073-016-0329-5  0.72
2015 Jain R, Chen Y, Kanno Y, Joyce-Shaikh B, Vahedi G, Hirahara K, Blumenschein WM, Sukumar S, Haines CJ, Sadekova S, McClanahan TK, McGeachy MJ, O'Shea JJ, Cua DJ. Interleukin-23-Induced Transcription Factor Blimp-1 Promotes Pathogenicity of T Helper 17 Cells. Immunity. PMID 26750311 DOI: 10.1016/j.immuni.2015.11.009  0.72
2015 Paiano JJ, Johnson JL, Vahedi G. Enhancing our understanding of enhancers in T-helper cells. European Journal of Immunology. PMID 26444855 DOI: 10.1002/eji.201546035  0.72
2015 Witte S, O'Shea JJ, Vahedi G. Super-enhancers: Asset management in immune cell genomes. Trends in Immunology. 36: 519-26. PMID 26277449 DOI: 10.1016/j.it.2015.07.005  0.72
2015 Yang XP, Jiang K, Hirahara K, Vahedi G, Afzali B, Sciume G, Bonelli M, Sun HW, Jankovic D, Kanno Y, Sartorelli V, O'Shea JJ, Laurence A. EZH2 is crucial for both differentiation of regulatory T cells and T effector cell expansion. Scientific Reports. 5: 10643. PMID 26090605 DOI: 10.1038/srep10643  0.72
2015 Hirahara K, Onodera A, Villarino AV, Bonelli M, Sciumè G, Laurence A, Sun HW, Brooks SR, Vahedi G, Shih HY, Gutierrez-Cruz G, Iwata S, Suzuki R, Mikami Y, Okamoto Y, et al. Asymmetric Action of STAT Transcription Factors Drives Transcriptional Outputs and Cytokine Specificity. Immunity. 42: 877-89. PMID 25992861 DOI: 10.1016/j.immuni.2015.04.014  0.72
2015 Vahedi G, Kanno Y, Furumoto Y, Jiang K, Parker SC, Erdos MR, Davis SR, Roychoudhuri R, Restifo NP, Gadina M, Tang Z, Ruan Y, Collins FS, Sartorelli V, O'Shea JJ. Super-enhancers delineate disease-associated regulatory nodes in T cells. Nature. 520: 558-62. PMID 25686607 DOI: 10.1038/nature14154  0.72
2014 Kanno T, Kanno Y, LeRoy G, Campos E, Sun HW, Brooks SR, Vahedi G, Heightman TD, Garcia BA, Reinberg D, Siebenlist U, O'Shea JJ, Ozato K. BRD4 assists elongation of both coding and enhancer RNAs by interacting with acetylated histones. Nature Structural & Molecular Biology. 21: 1047-57. PMID 25383670 DOI: 10.1038/nsmb.2912  0.72
2014 Shih HY, Sciumè G, Poholek AC, Vahedi G, Hirahara K, Villarino AV, Bonelli M, Bosselut R, Kanno Y, Muljo SA, O'Shea JJ. Transcriptional and epigenetic networks of helper T and innate lymphoid cells. Immunological Reviews. 261: 23-49. PMID 25123275 DOI: 10.1111/imr.12208  0.72
2014 Vahedi G, Richard AC, O'Shea JJ. Enhancing the understanding of asthma. Nature Immunology. 15: 701-3. PMID 25045871 DOI: 10.1038/ni.2946  0.72
2014 Bonelli M, Shih HY, Hirahara K, Singelton K, Laurence A, Poholek A, Hand T, Mikami Y, Vahedi G, Kanno Y, O'Shea JJ. Helper T cell plasticity: impact of extrinsic and intrinsic signals on transcriptomes and epigenomes. Current Topics in Microbiology and Immunology. 381: 279-326. PMID 24831346 DOI: 10.1007/82_2014_371  0.72
2014 Steward-Tharp SM, Laurence A, Kanno Y, Kotlyar A, Villarino AV, Sciume G, Kuchen S, Resch W, Wohlfert EA, Jiang K, Hirahara K, Vahedi G, Sun HW, Feigenbaum L, Milner JD, et al. A mouse model of HIES reveals pro- and anti-inflammatory functions of STAT3. Blood. 123: 2978-87. PMID 24632714 DOI: 10.1182/blood-2013-09-523167  0.72
2014 Nakayamada S, Poholek AC, Lu KT, Takahashi H, Kato M, Iwata S, Hirahara K, Cannons JL, Schwartzberg PL, Vahedi G, Sun HW, Kanno Y, O'Shea JJ. Type I IFN induces binding of STAT1 to Bcl6: divergent roles of STAT family transcription factors in the T follicular helper cell genetic program. Journal of Immunology (Baltimore, Md. : 1950). 192: 2156-66. PMID 24489092 DOI: 10.4049/jimmunol.1300675  0.72
2013 Roychoudhuri R, Hirahara K, Mousavi K, Clever D, Klebanoff CA, Bonelli M, Sciumè G, Zare H, Vahedi G, Dema B, Yu Z, Liu H, Takahashi H, Rao M, Muranski P, et al. BACH2 represses effector programs to stabilize T(reg)-mediated immune homeostasis. Nature. 498: 506-10. PMID 23728300 DOI: 10.1038/nature12199  0.72
2013 Hirahara K, Poholek A, Vahedi G, Laurence A, Kanno Y, Milner JD, O'Shea JJ. Mechanisms underlying helper T-cell plasticity: implications for immune-mediated disease. The Journal of Allergy and Clinical Immunology. 131: 1276-87. PMID 23622118 DOI: 10.1016/j.jaci.2013.03.015  0.72
2013 Vahedi G, Kanno Y, Sartorelli V, O'Shea JJ. Transcription factors and CD4 T cells seeking identity: masters, minions, setters and spikers. Immunology. 139: 294-8. PMID 23586907 DOI: 10.1111/imm.12113  0.72
2013 Adamson A, Ghoreschi K, Rittler M, Chen Q, Sun HW, Vahedi G, Kanno Y, Stetler-Stevenson WG, O'Shea JJ, Laurence A. Tissue inhibitor of metalloproteinase 1 is preferentially expressed in Th1 and Th17 T-helper cell subsets and is a direct STAT target gene. Plos One. 8: e59367. PMID 23555662 DOI: 10.1371/journal.pone.0059367  0.72
2013 Vahedi G, C Poholek A, Hand TW, Laurence A, Kanno Y, O'Shea JJ, Hirahara K. Helper T-cell identity and evolution of differential transcriptomes and epigenomes. Immunological Reviews. 252: 24-40. PMID 23405893 DOI: 10.1111/imr.12037  0.72
2012 Sciumé G, Hirahara K, Takahashi H, Laurence A, Villarino AV, Singleton KL, Spencer SP, Wilhelm C, Poholek AC, Vahedi G, Kanno Y, Belkaid Y, O'Shea JJ. Distinct requirements for T-bet in gut innate lymphoid cells. The Journal of Experimental Medicine. 209: 2331-8. PMID 23209316 DOI: 10.1084/jem.20122097  0.72
2012 Vahedi G, Takahashi H, Nakayamada S, Sun HW, Sartorelli V, Kanno Y, O'Shea JJ. STATs shape the active enhancer landscape of T cell populations. Cell. 151: 981-93. PMID 23178119 DOI: 10.1016/j.cell.2012.09.044  0.72
2012 Hirahara K, Ghoreschi K, Yang XP, Takahashi H, Laurence A, Vahedi G, Sciumè G, Hall AO, Dupont CD, Francisco LM, Chen Q, Tanaka M, Kanno Y, Sun HW, Sharpe AH, et al. Interleukin-27 priming of T cells controls IL-17 production in trans via induction of the ligand PD-L1. Immunity. 36: 1017-30. PMID 22726954 DOI: 10.1016/j.immuni.2012.03.024  0.72
2012 Kanno Y, Vahedi G, Hirahara K, Singleton K, O'Shea JJ. Transcriptional and epigenetic control of T helper cell specification: molecular mechanisms underlying commitment and plasticity. Annual Review of Immunology. 30: 707-31. PMID 22224760 DOI: 10.1146/annurev-immunol-020711-075058  0.72
2011 Nakayamada S, Kanno Y, Takahashi H, Jankovic D, Lu KT, Johnson TA, Sun HW, Vahedi G, Hakim O, Handon R, Schwartzberg PL, Hager GL, O'Shea JJ. Early Th1 cell differentiation is marked by a Tfh cell-like transition. Immunity. 35: 919-31. PMID 22195747 DOI: 10.1016/j.immuni.2011.11.012  0.72
2011 Hirahara K, Vahedi G, Ghoreschi K, Yang XP, Nakayamada S, Kanno Y, O'Shea JJ, Laurence A. Helper T-cell differentiation and plasticity: insights from epigenetics. Immunology. 134: 235-45. PMID 21977994 DOI: 10.1111/j.1365-2567.2011.03483.x  0.72
2011 O'Shea JJ, Lahesmaa R, Vahedi G, Laurence A, Kanno Y. Genomic views of STAT function in CD4+ T helper cell differentiation. Nature Reviews. Immunology. 11: 239-50. PMID 21436836 DOI: 10.1038/nri2958  0.72
2011 Yang XP, Ghoreschi K, Steward-Tharp SM, Rodriguez-Canales J, Zhu J, Grainger JR, Hirahara K, Sun HW, Wei L, Vahedi G, Kanno Y, O'Shea JJ, Laurence A. Opposing regulation of the locus encoding IL-17 through direct, reciprocal actions of STAT3 and STAT5. Nature Immunology. 12: 247-54. PMID 21278738 DOI: 10.1038/ni.1995  0.72
2010 Wei L, Vahedi G, Sun HW, Watford WT, Takatori H, Ramos HL, Takahashi H, Liang J, Gutierrez-Cruz G, Zang C, Peng W, O'Shea JJ, Kanno Y. Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation. Immunity. 32: 840-51. PMID 20620946 DOI: 10.1016/j.immuni.2010.06.003  0.72
2010 Durant L, Watford WT, Ramos HL, Laurence A, Vahedi G, Wei L, Takahashi H, Sun HW, Kanno Y, Powrie F, O'Shea JJ. Diverse targets of the transcription factor STAT3 contribute to T cell pathogenicity and homeostasis. Immunity. 32: 605-15. PMID 20493732 DOI: 10.1016/j.immuni.2010.05.003  0.72
2009 Faryabi B, Vahedi G, Datta A, Chamberland JF, Dougherty ER. Recent advances in intervention in markovian regulatory networks. Current Genomics. 10: 463-77. PMID 20436874 DOI: 10.2174/138920209789208246  0.72
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Sampling-rate-dependent probabilistic Boolean networks. Journal of Theoretical Biology. 261: 540-7. PMID 19716832 DOI: 10.1016/j.jtbi.2009.08.026  0.72
2009 Vahedi G, Ivanov IV, Dougherty ER. Inference of Boolean networks under constraint on bidirectional gene relationships. Iet Systems Biology. 3: 191-202. PMID 19449979 DOI: 10.1049/iet-syb.2007.0070  0.72
2009 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Intervention in context-sensitive probabilistic Boolean networks revisited. Eurasip Journal On Bioinformatics & Systems Biology. 360864. PMID 19404383 DOI: 10.1155/2009/360864  0.72
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Optimal intervention strategies for cyclic therapeutic methods. Ieee Transactions On Bio-Medical Engineering. 56: 281-91. PMID 19272947 DOI: 10.1109/TBME.2008.2003092  0.72
2009 Vahedi G, Shmulevich I, Liu W, Dougherty E. Critical boolean networks require minimal intervention rate 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174341  0.72
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Intervention in gene regulatory networks via a stationary mean-first-passage-time control policy. Ieee Transactions On Bio-Medical Engineering. 55: 2319-31. PMID 18838357 DOI: 10.1109/TBME.2008.925677  0.72
2008 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Optimal constrained stationary intervention in gene regulatory networks. Eurasip Journal On Bioinformatics & Systems Biology. 620767. PMID 18516276 DOI: 10.1155/2008/620767  0.72
2008 Ivanov I, Vahedi G, Dougherty E. Constrained reduction mapping for a class of network models of genomic regulation 2007 Ieee/Nih Life Science Systems and Applications Workshop, Lisa. 192-195. DOI: 10.1109/LSSA.2007.4400917  0.72
2008 Faryabi B, Chamberland JF, Vahedi G, Datta A, Dougherty ER. Optimal intervention in asynchronous genetic regulatory networks Ieee Journal On Selected Topics in Signal Processing. 2: 412-423. DOI: 10.1109/JSTSP.2008.923853  0.72
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty E. Modeling cyclic therapy in gene regulatory networks Gensips'08 - 6th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2008.4555670  0.72
2008 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Constrained intervention in a cancerous mammalian cell cycle network Gensips'08 - 6th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2008.4555669  0.72
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Mean first-passage time control policy versus reinforcement-learning control policy in gene regulatory networks Proceedings of the American Control Conference. 1394-1399. DOI: 10.1109/ACC.2008.4586687  0.72
2008 Faryabi B, Chamberland JF, Vahedi G, Datta A, Dougherty ER. Optimal intervention in semi-Markov-based asynchronous genetic regulatory networks Proceedings of the American Control Conference. 1388-1393. DOI: 10.1109/ACC.2008.4586686  0.72
2007 Vahedi G, Datta A, Dougherty ER. Which control gene should be used in genetic regulatory networks? Ieee Workshop On Statistical Signal Processing Proceedings. 6-10. DOI: 10.1109/SSP.2007.4301207  0.72
2007 Vahedi G, Ivanov I, Dougherty ER. Bidirectional relationships and attractor structure of Boolean networks Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2007.4365822  0.72
2004 Vahedi G, Kaler K, Backhouse CJ. An integrated method for mutation detection using on-chip sample preparation, single-stranded conformation polymorphism, and heteroduplex analysis. Electrophoresis. 25: 2346-56. PMID 15274017 DOI: 10.1002/elps.200405957  0.72
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